Rauchenwald, K., Miksovsky, P., Schröder, K., Edtmaier, T., Shirvani, R., Steiger, M., Föttinger, K., & Konegger, T. (2025, August 31). Freeze-casting of polysiloxane-derived ceramics for CO2 utilization. XIXth Conference of the European Ceramic Society (ECerS XIX 2025), Dresden, Germany.

Rauchenwald, K., Shirvani, R., Edtmaier, T., Steiger, M., & Konegger, T. (2025). Freeze-cast SiOC ceramics supporting the growth of industrially relevant microorganisms. PLoS ONE, 20(6), e0325311. https://doi.org/10.1371/journal.pone.0325311

Fronek, F., Köber, A., Schittmayer-Schantl, M., Birner-Grünberger, R., & Steiger, M. G. (2025, May 15). Harnessing Yeast-Derived VLPs for Enzyme Encapsulation and Biocatalysis. Annual Conference on Yeasts 2025, Smolenice, Slovakia. https://doi.org/10.34726/9782

Rauchenwald, K., Miksovsky, P., Schröder, K., Edtmaier, T., Shirvani, R., Steiger, M., Föttinger, K., & Konegger, T. (2025, April 3). Freeze-casting of polysiloxane-derived ceramics for CO2 utilization. AuCerS 2025 - Workshop “Keramik in Österreich” und 13. Mitgliederversammlung, Wien, Austria.

Rauchenwald, K., Miksovsky, P., Schröder, K., Edtmaier, T., Shirvani, R., Steiger, M., Föttinger, K., & Konegger, T. (2025, January 30). Freeze-casting of polysiloxane-derived ceramics for CO₂ utilization. 49th International Conference and Exposition on Advanced Ceramics and Composites, Daytona Beach, United States of America (the).

Ellena, V., Ioannou, A., Kolm, C., Farnleitner, A., & Steiger, M. G. (2024). Development of a whole-cell SELEX process to select species-specific aptamers against Aspergillus niger. Fungal Biology and Biotechnology, 11(1), Article 17. https://doi.org/10.1186/s40694-024-00185-2

Fritsche, S., Fronek, F., Mach, R., & Steiger, M. (2024, September 17). Applicability of non-invasive and live-cell holotomographic imaging on fungi. ÖGMBT Annual Meeting 2024, Graz, Austria. https://doi.org/10.34726/8502

Shirvani, R., & Steiger, M. (2024, September 17). Characterization of a synthetic, linear pathway for methanol assimilation based on formolase in Komagataella phaffii. 16th ÖGMBT Annual Meeting 2024, Graz, Austria.

Atasoy, M., Bartkova, S., Çetecioğlu-Gürol, Z., Mira, N. P., O’Byrne, C., Pérez Rodríguez, F., Possas, A., Scheler, O., Sedláková-Kaduková, J., Sinčák, M., Steiger, M., Ziv, C., & Lund, P. (2024). Methods for studying microbial acid stress responses: from molecules to populations. FEMS Microbiology Reviews, 48(5), Article fuae015. https://doi.org/10.1093/femsre/fuae015

Fritsche, S., Fronek, F., Mach, R., & Steiger, M. G. (2024). Applicability of non-invasive and live-cell holotomographic imaging on fungi. Journal of Microbiological Methods, 224, Article 106983. https://doi.org/10.1016/j.mimet.2024.106983

Fritsche, S., Reinfurt, A., Fronek, F., & Steiger, M. G. (2024). NHEJ and HDR can occur simultaneously during gene integration into the genome of Aspergillus niger. Fungal Biology and Biotechnology, 11, Article 10. https://doi.org/10.1186/s40694-024-00180-7

van den Broek, J., Keller, S., Goodall, I., Parish-Virtue, K., Bauer-Christoph, C., Fuchs, J., Tsipi, D., Güntner, A. T., Blum, T., Mathurin, J.-C., Steiger, M. G., Shirvani, R., Gössinger, M., Graf, M., Anderhub, P., Z’graggen, D., Hüsser, C., Faigle, B., & Agapios, A. (2024). Handheld methanol detector for beverage analysis: interlaboratory validation. Analytical Methods, 16(24), 3859–3866. https://doi.org/10.1039/d4ay00919c

Rauchenwald, K., Miksovsky, P., Shirvani, R., Edtmaier, T., Schröder, K., Föttinger, K., Steiger, M., & Konegger, T. (2024, May 29). Freeze-casting of polysiloxane-derived ceramics for CO2 utilization. 2nd TCH Science Days: PhD & Postdoc Day 2024, Wien, Austria.

Shirvani, R., & Steiger, M. (2024, May 15). Exploring a synthetic pathway for methanol assimilation in Komagataella phaffii. Annual Conference on Yeasts 2024, Smolenice Castle, Slovakia.

Reinfurt, A., Fritsche, S., Bíró, V., Márton, A., Fekete, E., Karaffa, L., & Steiger, M. (2023, September 19). Manganese and its regulatory role on the citrate exporter CexA – exploring the citric acid production mechanism of Aspergillus niger. COST EuroMicropH - Open Meeting: Understanding and exploiting the impacts of low pH on micro-organisms (2023), Wien, Austria.

Steiger, M., & Pflügl, S. (Eds.). (2023). Microbial Stress 2023 - 6th Meeting on Microbial Responses to Stress : Programme and Abstracts.

Steiger, M., De Biase, D., & Lund, P. (Eds.). (2023). EuroMicropH Open Meeting: Understanding and Exploiting the Impacts of Low pH on Micro-organisms. Programme and Abstracts. https://doi.org/10.34726/5424

Steiger, M. (2023, August 8). The Industrial Yeast Pichia pastoris Is Converted from a Heterotroph into an Autotroph Capable of Growth on CO2. Molecular Basis of Microbial One-Carbon Metabolism, Southbridge, MA, United States, United States of America (the).

Reinfurt, A., Bíró, V., Márton, A., Fritsche, S., Ellena, V., Fekete, E., Karaffa, L., & Steiger, M. (2023, June 8). Manganese and its regulatory role on the citrate exporter CexA - exploring the citric acid production mechanism of Aspergillus niger. PYFF8 - 8th Conference on Physiology of Yeasts and Filamentous Fungi 2023, Cork, Ireland.

Shirvani, R., & Steiger, M. (2023, June 7). Using the formose reaction for methanol assimilation in Komagataella phaffii. PYFF8, Cork, Ireland.

Shirvani, R., Bartik, A., Andrade Silva Alves, G., Garcia de Otazo Hernandez, D., Föttinger, K., Müller, S., & Steiger, M. (2023). Nitrogen recovery from low-value biogenic feedstocks via steam gasification to yeast biomass. In 8th Conference on Physiology of Yeasts & Filamentous Fungi - Abstract Book (pp. 51–52).

Shirvani, R., Bartik, A., Alves, G. A. S., Garcia de Otazo Hernandez, D., Müller, S., Föttinger, K., & Steiger, M. (2023). Nitrogen recovery from low-value biogenic feedstocks via steam gasification to methylotrophic yeast biomass. Frontiers in Bioengineering and Biotechnology, 11, Article 1179269. https://doi.org/10.3389/fbioe.2023.1179269

Steiger, M. (2023, May 16). The impact of manganese on citric acid production. Working group Meeting - Bratislava Yeast4Bio, Faculty of Chemical and Food Technology, Slovak University of Technology, Slovakia.

Reinfurt, A., Bíró, V., Márton, A., Ellena, V., Fekete, E., Karaffa, L., & Steiger, M. G. (2023, March 7). Manganese and its regulatory role on the citrate exporter CexA - exploring the citric acid production mechanism of Aspergillus niger. 16th European Conference on Fungal Genetics (ECFG16), Innsbruck, Austria.

Fritsche, S., Steiger, M., & Fronek, F. (2023, March 5). A novel holotomographic live cell imaging method to study cellular processes in fungi. ECFG 2023, Innsbruck, Austria.

Steiger, M., & Shirvani, R. (2023, February 16). Sugar synthesis by formolase in yeast cells. 26th Austrian Carbohydrate Workshop, TUtheSky TU Wien, Austria.

Ellena, V., & Steiger, M. (2022, November 14). Generation and evaluation of Aspergillus-specific DNA aptamers to improve diagnosis of aspergillosis. ESIB 2022, Graz, Austria.

Fritsche, S., & Steiger, M. (2022, November 14). Optimizing carbon catabolism for improved organic acid production in Aspergillus niger. ESIB - European Summit of Industrial Biotechnology 2022, Graz, Austria.

Shirvani, R., & Steiger, M. (2022, November 14). Development of a SNARE-based cell fusion system in Pichia pastoris. Pichia 2022, Graz, Austria.

Ellena, V. (2022). ADApt: Aspergillus-detecting aptamers. In Österreichische Chemietage 2022 (pp. 164–164).

Köber, A., & Steiger, M. (2022, September 19). Synthetic promoters for the production of biomolecules in yeast. Österreichische Chemietage 2022, Wien, Austria.

Ellenaa, V., & Steiger, M. (2022). The Good Fungus – About the Potential of Fungi for Our Future. In F. de Bruin, H. Smidt, L. S. Cocolin, M. Sauer, D. Dowling, & L. Thomashow (Eds.), Good Microbes in Medicine, Food Production, Biotechnology, Bioremediation, and Agriculture (pp. 287–293). https://doi.org/10.1002/9781119762621.ch23

Ellena, V., & Steiger, M. (2022). The importance of complete and high-quality genome sequences in Aspergillus niger research. Frontiers in Fungal Biology, 3. https://doi.org/10.3389/ffunb.2022.935993

Yuan, Z.-L., Wu, Q., Xu, L., Druzhinina, I., Stukenbrock, E. H., Nieuwenhuis, B. P. S., Zhong, Z., Liu, Z.-J., Wang, X., Cai, F., Kubicek, C. P., Shan, X., Wang, J., Shi, G., Peng, L., & Martin, F. M. (2022). Genomic landscape of a relict fir-associated fungus reveals rapid convergent adaptation towards endophytism. The ISME Journal, 16(5), 1294–1305. https://doi.org/10.1038/s41396-021-01176-6

Fritsche, S., & Steiger, M. (2022, March 15). Aspergillus niger conidial germination: 3D live cell exploration. 31st Fungal Genetics Conference, Asilomar Conference Grounds, Pacific Grove, CA, United States of America (the).

Fritsche, S., & Steiger, M. (2022, March 15). Aspergillus niger conidial germination: 3D live cell exploration. 31st Fungal Genetics Conference, Asilomar Conference Grounds, Pacific Grove, CA, United States of America (the).

Reinfurt, A., Ellena, V., & Steiger, M. (2022, March 15). cexA and its regulatory processes - the manganese mistery of A. niger. 31st Fungal Genetics Conference, Pacific Grove, CA, USA, United States of America (the).

Reinfurt, A., Ellena, V., & Steiger, M. (2022, March 15). cexA and its regulatory processes - the manganese mistery of A. niger. Österreichische Chemietage 2022, Wien, Austria.

Ellena, V., & Steiger, M. (2022, March). The fungal sexual revolution continues: indications of sexuality in the citric acid producing fungus Aspergillus niger. 31st Fungal Genetics Conference, United States of America (the).

Brandstätter, C., Fricko, N., Rahimi, M., Fellner, J., Ecker-Lala, W., & Druzhinina, I. S. (2022). The microbial metabolic activity on carbohydrates and polymers impact the biodegradability of landfilled solid waste. Biodegradation, 33(1), 71–85. https://doi.org/10.1007/s10532-021-09967-6

Cai, F., & Druzhinina, I. S. (2021). In honor of John Bissett: authoritative guidelines on molecular identification of Trichoderma. Fungal Diversity, 107(1), 1–69. https://doi.org/10.1007/s13225-020-00464-4

Cai, F., Kubicek, C. P., & Druzhinina, I. S. (2021). Genetic Transformation of Trichoderma spp. In Biofuels and Biodiesel (pp. 171–185). Springer Nature Switzerland AG 2021. https://doi.org/10.1007/978-1-0716-1323-8_12

Cai, F., Zhao, Z., Gao, R., Chen, P., Ding, M., Jiang, S., Fu, Z., Xu, P., Chenthamara, K., Shen, Q., Bayram Akcapinar, G., & Druzhinina, I. S. (2021). The pleiotropic functions of intracellular hydrophobins in aerial hyphae and fungal spores. PLoS Genetics, 17(11), e1009924. https://doi.org/10.1371/journal.pgen.1009924

Chen, P., Pang, G., Cai, F., & Druzhinina, I. (2021). Strain Improvement and Genetic Engineering of Trichoderma f or Industrial Applications. In O. Zaragoza & A. Casadevall (Eds.), Encyclopedia of Mycology (pp. 505–517). Elsevier Inc.

Daly, P., Cai, F., Kubicek, C. P., Jiang, S., Grujic, M., Rahimi, M. J., Sheteiwy, M. S., Giles, R., Riaz, A., de Vries, R. P., Akcapinar, G. B., Wei, L., & Druzhinina, I. S. (2021). From lignocellulose to plastics: Knowledge transfer on the degradation approaches by fungi. Biotechnology Advances, 50(107770), 107770. https://doi.org/10.1016/j.biotechadv.2021.107770

Lücking, R., Aime, C., Robbertse, B., Miller, A. N., Aoki, T., Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I., & Geiser, D. M. (2021). Fungal taxonomy and sequence-based nomenclature. Nature Microbiology, 6(5), 540–548. https://doi.org/10.1038/s41564-021-00888-x

Zhao, Z., Cai, F., Gao, R., Ding, M., Jiang, S., Chen, P., Pang, G., Chenthamara, K., Shen, Q., Bayram Akcapinar, G., & Druzhinina, I. S. (2021). At least three families of hyphosphere small secreted cysteine-rich proteins can optimize surface properties to a moderately hydrophilic state suitable for fungal attachment. Environmental Microbiology, 23(10), 5750–5768. https://doi.org/10.1111/1462-2920.15413

van Bohemen, A.-I., Ruiz, N., Zalouk-Vergnoux, A., Michaud, A., Robiou du Pont, T., Druzhinina, I., Atanasova, L., Prado, S., Bodo, B., Meslet Cladiere, L., Cochereau, B., Bastide, F., Maslard, C., Guillemette, T., & Pouchus, Y. F. (2021). Pentadecaibins I−V: 15-Residue Peptaibols Produced by a Marine-DerivedTrichodermasp. of theHarzianumClade. Journal of Natural Products, 84(4), 1271–1282. https://doi.org/10.1021/acs.jnatprod.0c01355

Cai, F., Gao, R., Zhao, Z., Ding, M., Jiang, S., Yagtu, A. C., Zhu, H., Zhang, J., Ebner, T., Mayrhofer-Reinhartshuber, M., Kainz, P., Chenthamara Kariyankode, K., Bayram Akcapinar, G., Shen, Q., & Druzhinina, I. (2020). Evolutionary compromises in fungal fitness: hydrophobins can hinder the adverse dispersal of conidiospores and challenge their survival. ISME JOURNAL, 14(10), 2610–2624. https://doi.org/10.1038/s41396-020-0709-0

Andersson, M. A., Salo, J., Kedves, O., Kredics, L., Druzhinina, I., Kurnitski, J., & Salonen, H. (2020). Bioreactivity, Guttation and Agents Influencing Surface Tension ofWater Emitted by Actively Growing Indoor Mould Isolates. Microorganisms, 8(12), 1940. https://doi.org/10.3390/microorganisms8121940

Cai, F., Gao, R., Zhao, Z., Ding, M., & Druzhinina, I. (2020). Never shall those born to crawl, learn to fly: Evolutionary compromises between spore hydrophobicity and fitness in Trichoderma. In Program & Abstracts (p. 123).

Cai, F., Gao, R., Zhao, Z., Ding, M., Akcapinar, G. B., & Druzhinina, I. (2020). lntracellular functions of hydrophobins and other surface-active proteins in Trichoderma. In Program & Abstracts (p. 214).

Chenthamara, K., Druzhinina, I. S., Rahimi, M. J., Grujic, M., & Cai, F. (2020). Ecological Genomics and Evolution of Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 1–21). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_1

Ding, M. ‐Y., Chen, W., Ma, X. ‐C., Lv, B. ‐W., Jiang, S. ‐Q., Yu, Y. ‐N., Rahimi, M. J., Gao, R. ‐W., Zhao, Z., Cai, F., & Druzhinina, I. S. (2020). Emerging salt marshes as a source of Trichoderma arenarium sp. nov. and other fungal bioeffectors for biosaline agriculture. Journal of Applied Microbiology, 130(1), 179–195. https://doi.org/10.1111/jam.14751

Gao, R., Cai, F., Ding, M., Jiang, S., Zhao, Z., & Druzhinina, I. (2020). Evolutionary odyssey of effector-like proteins in the mycoparasitic fungus Trichoderma. In Program & Abstracts (pp. 385–386).

Gao, R., Ding, M., Jiang, S., Zhao, Z., Chenthamara, K., Shen, Q., Cai, F., & Druzhinina, I. S. (2020). The Evolutionary and Functional Paradox of Cerato-plataninsin Fungi. Applied and Environmental Microbiology, 86(13). https://doi.org/10.1128/aem.00696-20

Gupta, V. K., Zeilinger, S., Singh, H. B., & Druzhinina, I. (2020). New and Future Developments in Microbial Biotechnology and Bioengineering - Recent Developments in Trichoderma Research. Elsevier.

Hinterdobler, W., Beier, S., Kindel, S., & Schmoll, M. (2020). Sexual development, its determinants, and regulation in Trichoderma reesei. In V. K. Gupta, S. Zeilinger, H. B. Singh, & I. Druzhinina (Eds.), New and Future Developments in Microbial Biotechnology and Bioengineering (pp. 185–206). Elsevier B.V. https://doi.org/10.1016/b978-0-12-819453-9.00009-x

Hochenegger, N., Vignolle, G. A., Mach, R. L., Druzhinina, I., Mach-Aigner, A. R., & Derntl, C. (2020). Bioprospecting a newly identified fungus from the Borneo rain forest regarding its bioactive properties. In Program & Abstracts (p. 222).

Hönigsberger, M., Pretzer, C., Rahimi, M., Kopchinskiy, A., Parich, A., Laciny, A., Metscher, B., Chan, C. M., Lim, L., Salim, K. A., Zettel, H., Druzhinina, I., & Schuhmacher, R. (2020). Strong antimicrobial and low insecticidal activity of mandibular gland reservoir content in Bornean “exploding ants” Colobopsis explodens. MYRMECOLOGICAL NEWS, 30, 201–212. https://doi.org/10.25849/myrmecol.news_030:201

Lücking, R., Aime, C., Robbertse, B., Miller, A. N., Ariyawansa, H. A., Aoki, T., Cardinali, G., Crous, P. W., Druzhinina, I., Geiser, D. M., Hawksworth, D., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P., Kirk, P. M., Malosso, E., May, T., Meyer, W., & Schoch, C. (2020). Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding? IMA FUNGUS, 11, Article 14. https://doi.org/10.1186/s43008-020-00033-z

Pang, G., Druzhinina, I., Sun, T., Zhu, H., & Zhang, J. (2020). Azaphilones biosynthesis in Trichoderma harzianum benefits fungal survival to oxidative stress. In Program & Abstracts (pp. 373–374).

Pérez-Llano, Y., Rodríguez-Pupo, E. C., Druzhinina, I. S., Chenthamara, K., Cai, F., Gunde-Cimerman, N., Zalar, P., Gostinčar, C., Kostanjšek, R., Folch-Mallol, J. L., Batista-García, R. A., & Sánchez-Carbente, M. del R. (2020). Stress Reshapes the Physiological Response of Halophile Fungi to Salinity. Cells, 9(3), 525. https://doi.org/10.3390/cells9030525

Rahimi, M. J., Cai, F., Grujic, M., Chenthamara, K., & Druzhinina, I. S. (2020). Molecular Identification of Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 157–175). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_14

Rahimi, M., Jiang, S., Grujic, M., Prusa, M., Gao, R., Abu Salim, K., Lim, L., Cai, F., & Druzhinina, I. (2020). Ecophysiology and applied biodiversity of phillosphere fungi in tropical and subtropical forests. In Program & Abstracts (pp. 415–416).

Reismann, A. W. A. F., Atanasova, L., Zeilinger, S., & Schütz, G. J. (2020). Single-Molecule Localization Microscopy to Study Protein Organization in the Filamentous Fungus Trichoderma atroviride. Molecules, 25(14), 3199. https://doi.org/10.3390/molecules25143199

Yuan, Z., Druzhinina, I. S., Wang, X., Zhang, X., Peng, L., & Labbé, J. (2020). Insight into a highly polymorphic endophyte isolated from the roots of the halophytic seepweed Suaeda salsa: Laburnicola rhizohalophila sp. nov. (Didymosphaeriaceae, Pleosporales). Fungal Biology, 124(5), 327–337. https://doi.org/10.1016/j.funbio.2019.10.001

Zeilinger, S., & Atanasova, L. (2020). Sensing and regulation of mycoparasitism-relevant processes in Trichoderma. In V. K. Gupta, S. Zeilinger, H. B. Singh, & I. Druzhinina (Eds.), New and Future Developments in Microbial Biotechnology and Bioengineering (pp. 39–55). Elsevier B.V. https://doi.org/10.1016/b978-0-12-819453-9.00002-7

Cai, F., Gao, R., Zhao, Z., Ding, M., Chenthamara-Kariyankode, K., Akcapinar, G. B., Shen, Q., & Druzhinina, I. (2019). Hydrophobins constitute the major part of the massive extracellular matrix of the conidiating Trichoderma colony and influence its fitness by modulating spore dispersal and survival. In Abstract Book (p. 1).

Chenthamara-Kariyankode, K., Cai, F., von Rotz, S., Cervenka, I., Shen, Q., & Druzhinina, I. (2019). The enrichment in hydrophobin-encoding genes constitutes the main genomic hallmark of Trichoderma: the pattern search revealed a plethora of unlmown genes absent in other hypocrealean fungi. In Abstract Book (p. 1).

Chenthamara-Kariyankode, K., Steindorff, A. S., Gojic, V., Shelest, E., Grigoriev, I., Kubicek, C. P., & Druzhinina, I. (2019). The comparative genemies of the most common Triehederma species reveals the unique pattern of the ankyrin domain-containing proteins in orphomes of individual Triehederma species. In Abstract Book (p. 1).

Grujić, M., Dojnov, B., Potočnik, I., Atanasova, L., Duduk, B., Srebotnik, E., Druzhinina, I. S., Kubicek, C. P., & Vujčić, Z. (2019). Superior cellulolytic activity of Trichoderma guizhouense on raw wheat straw. World Journal of Microbiology and Biotechnology, 35(194). https://doi.org/10.1007/s11274-019-2774-y

Hatvani, L., Homa, M., Chenthamara, K., Cai, F., Kocsubé, S., Atanasova, L., Mlinaric-Missoni, E., Manikandan, P., Revathi, R., Dóczi, I., Bogáts, G., Narendran, V., Büchner, R., Vágvölgyi, C., Druzhinina, I. S., & Kredics, L. (2019). Agricultural systems as potential sources of emerging human mycoses caused by Trichoderma: a successful, common phylotype of Trichoderma longibrachiatum in the frontline. FEMS Microbiology Letters, 366(21). https://doi.org/10.1093/femsle/fnz246

Hoenigsberger, M., Kopchinskiy, A., Bueschl, C., Parich, A., Laciny, A., Zettel, H., Salim, K., Lim, L., Druzhinina, I., & Schuhmacher, R. (2019). Volatiles from the Mandibular Gland Reservoir Content of Colobopsis explodens Laciny and Zettel, 2018, Worker Ants (Hymenoptera: Formicidae). Molecules, 24(19), 3468. https://doi.org/10.3390/molecules24193468

Kubicek, C. P., Steindorff, A. S., Chenthamara, K., Manganiello, G., Henrissat, B., Zhang, J., Cai, F., Kopchinskiy, A. G., Kubicek, E. M., Kuo, A., Baroncelli, R., Sarrocco, S., Noronha, E. F., Vannacci, G., Shen, Q., Grigoriev, I. V., & Druzhinina, I. S. (2019). Evolution and comparative genomics of the most common Trichoderma species. BMC Genomics, 20(485). https://doi.org/10.1186/s12864-019-5680-7

Marik, T., Tyagi, C., Balázs, D., Urbán, P., Szepesi, Á., Bakacsy, L., Endre, G., Rakk, D., Szekeres, A., Andersson, M. A., Salonen, H., Druzhinina, I. S., Vágvölgyi, C., & Kredics, L. (2019). Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus Trichoderma. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.01434

Zhang, J., Miao, Y., Rahimi, M. J., Zhu, H., Steindorff, A., Schiessler, S., Cai, F., Pang, G., Chenthamara Kariyankode, K., Xu, Y., Kubicek, C. P., Shen, Q., & Druzhinina, I. S. (2019). Guttation capsules containing hydrogen peroxide: an evolutionarily conserved NADPH oxidase gains a role in wars between related fungi. Environmental Microbiology, 21(8), 2644–2658. https://doi.org/10.1111/1462-2920.14575

Reismann, A. W. A. F., Atanasova, L., Schrangl, L., Zeilinger, S., & Schütz, G. J. (2018). Temporal Filtering to Improve Single Molecule Identification in High Background Samples. Molecules, 23(12), Article 3338. https://doi.org/10.3390/molecules23123338

Chadha, S., Mehetre, S. T., Bansal, R., Kuo, A., Aerts, A., Grigoriev, I. V., Druzhinina, I. S., & Mukherjee, P. K. (2018). Genome‑wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships. Fungal Biology and Biotechnology, 5(12). https://doi.org/10.1186/s40694-018-0056-3

Druzhinina, I. (2018). Trichoderma species on the genomic vastness. TG2018 - 15#^{th} International Trichoderma & Gliocladium Workshop, Salamanca, Spain.

Druzhinina, I., Chenthamara-Kariyankode, K., Zhang, J., Atanasova, L., Yang, D., Miao, Y., Rahimi, M., Grujic, M., Cai, F., Pourmehd, S., Abu Salim, K., Pretzer, C., Kopchinskiy, A. G., Henrissat, B., Kuo, A., Hundley, H., Wang, M., Aerts, A., Salamov, A., & Kubicek, P. C. (2018). Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. PLoS Genetics, 14(4), e1007322. https://doi.org/10.1371/journal.pgen.1007322

Hoenigsberger, M., Kopchinskiy, A. G., Parich, A., Hiller, K., Laciny, A., Zettel, H., Lim, L. B. L., Salim, K. A., Druzhinina, I. S., & Schuhmacher, R. (2018). Isolation of Mandibular Gland Reservoir Contents from Bornean “Exploding Ants” (Formicidae) for Volatilome Analysis by GC-MS and MetaboliteDetector. Journal of Visualized Experiments, 138. https://doi.org/10.3791/57652

Kamravamanesh, D., Kovacs, T., Druzhinina, I., Pflügl, S., Lackner, M., & Herwig, C. (2018). Photosynthetic Polyhydroxybutyrate Production in Cyanobacteria. In Book of Abstracts (p. 1).

Kamravamanesh, D., Kovacs, T., Pflügl, S., Druzhinina, I., Kroll, P., Lackner, M., & Herwig, C. (2018). Increased poly-β-hydroxybutyrate production from carbon dioxide in randomly mutated cells of cyanobacterial strain Synechocystis sp. PCC 6714: Mutant generation and characterization. Bioresource Technology, 266, 34–44. https://doi.org/10.1016/j.biortech.2018.06.057

Laciny, A., Zettel, H., Kopchinskiy, A., Pretzer, C., Pal, A., Abu Salim, K., Javad Rahimi, M., Hoenigsberger, M., Lim, L., Jaitrong, W., & Druzhinina, I. S. (2018). Colobopsis explodens sp. n., model species for studies on “exploding ants” (Hymenoptera, Formicidae), with biological notes and first illustrations of males of the Colobopsis cylindrica group. ZooKeys, 751, 1–40. https://doi.org/10.3897/zookeys.751.22661

Mukherjee, P. K., Hurley, J. F., Taylor, J. T., Puckhaber, L., Lehner, S., Druzhinina, I., Schumacher, R., & Kenerley, C. M. (2018). Ferricrocin, the intracellular siderophore of Trichoderma virens, is involved in growth, conidiation, gliotoxin biosynthesis and induction of systemic resistance in maize. Biochemical and Biophysical Research Communications, 505(2), 606–611. https://doi.org/10.1016/j.bbrc.2018.09.170

Touati, I., Ruiz, N., Thomas, O., Druzhinina, I. S., Atanasova, L., Tabbene, O., Elkahoui, S., Benzekri, R., Bouslama, L., Pouchus, Y. F., & Limam, F. (2018). Hyporientalin A, an anti-Candida peptaibol from a marine Trichoderma orientale. World Journal of Microbiology and Biotechnology, 34(98). https://doi.org/10.1007/s11274-018-2482-z

Zettel, H., Balaka, P., Yamane, S., Laciny, A., Lim, L., & Druzhinina, I. (2018). New mimetic ants from Southeast Asia - the Camponotus (Myrmamblys) inquilinus group (Hymenoptera: Formicidae: Camponotini). Zeitschrift Der Arbeitsgemeinschaft Österreichischer Entomologen, 70, 125–174.

Zettel, H., Laciny, A., Jaitrong, W., Syaukani, S., Kopchinskiy, A., & Druzhinina, I. (2018). Evidence of predation in two species of the Colobopsis cylindrica group (Hymenoptera: Formicidae: Camponotini). Asian Myrmecology, 10, 12. https://doi.org/10.20362/am.010011

du Plessis, I. L., Druzhinina, I. S., Atanasova, L., Yarden, O., & Jacobs, K. (2018). The diversity of Trichoderma species from soil in South Africa, with five new additions. Mycologia, 110(3), 559–583. https://doi.org/10.1080/00275514.2018.1463059

Przylucka, A., Bayram Akcapinar, G., Bonazza, K., Machado Mello De Sousa, T., Mach-Aigner, A. R., Lobanov, V., Grothe, H., Kubicek, C. P., Reimhult, E., & Druzhinina, I. (2017). COMPARATIVE PHYSIOCHEMICAL ANALYSIS OF HYDROPHOBINS PRODUCED IN ESCHERICHIA COLI AND PICHIA PASTORIS. Colloids and Surfaces B: Biointerfaces, 159, 913–923. https://doi.org/10.1016/j.colsurfb.2017.08.058

Akcapinar, G. B., Camposeo, T., Berezhinskiy, V., Przylucka, A., Cai, F., Mello de Sousa, T. M., Grothe, H., Reimhult, E., Mach-Aigner, A. R., Shen, Q., & Druzhinina, I. (2017). Learning from fungi: new applications of the natural and engineered surfaceactive proteins from fungi. In Book of Abstracts (p. 1).

Akcapinar, G. B., Przylucka, A., Cai, F., Mello de Sousa, T. M., Grothe, H., Reimhult, E., Mach-Aigner, A. R., Shen, Q., & Druzhinina, I. (2017). Learning from nature: establishment of a library of natural and rationally designed hydrophobins from Trichoderma spp. with diverse surface activity. In Abstract Book (p. 64).

Cai, F., Rahimi, M., Akcapinar, G. B., Yagtu, A. C., Przylucka, A., Pang, G., Shen, Q., & Druzhinina, I. (2017). Functional analysis of class II hydrophobin HFB4 in Trichoderma harzianum and its sibling species T. guizhouense. In Abstract Book (p. 123).

Chenthamara-Kariyankode, K., Cai, F., Przylucka, A., Shen, Q., Akcapinar, G. B., & Druzhinina, I. (2017). The Origin and Architecture of Trichoderma Hydrophobome. In Book of Abstracts (pp. 90–91).

Chenthamara-Kariyankode, K., Cai, F., Przylucka, A., Shen, Q., Akcapinar, G. B., & Druzhinina, I. (2017). The Origin and Architecture of Trichoderma Hydrophobome. In User Meeting Abstracts (pp. 24–25).

Druzhinina, I. (2017). Parasitism of Trichoderma on closely related fungi (adelphoparasitism) is linked to intensive interfungal DNA exchange. In Abstract Book (p. 108).

Druzhinina, I. (2017). Trichoderma é tão poderoso que seu uso na agricultura requer cuidados especiais. Revista Integração, #?(Especial Agro), 38–43.

Druzhinina, I. (2017). Using Mother Nature to Help Clean Up Mother Nature. Scientia.Global, #?(#113), 93–96.

Druzhinina, I., & Kubicek, C. P. (2017). Genetic engineering of Trichoderma reesei cellulases and their production. Microbial Biotechnology, 10(6), 1485–1499.

Druzhinina, I., Laminger, T., Kamravamanesh, D., Pflügl, S., Mauschitz, G., Mach, R. L., Herwig, C., & Friedl, A. (2017). Less plastic waste in the future. Open Access Government, 16, 312–313.

Druzhinina, I., Rahimi, M., Grujic, M., Forte, A., Pourmehdi, S., Pretzer, C., Kopchinskiy, A., Chenthamara-Kariyankode, K., Fischer, M., Laciny, A., Abu Salim, K., Lim, L., Chan, C. M., Parich, A., Schuhmacher, R., & Zettel, H. (2017). Ecophysiology of Fungi from the Habitats of Borneo’s “Exploding Ants.” In User Meeting Abstracts (pp. 36–37).

Laciny, A., Zettel, H., Kopchinskiy, A., & Druzhinina, I. (2017). Auf den Spuren der “explodierenden” Ameisen. Das Naturhistorische, #?(Frühling 2017), 3–5.

Laciny, A., Zettel, H., Metscher, B., Kamariah, A. S., Kopchinskiy, A., Pretzer, C., & Druzhinina, I. (2017). Morphological variation and mermithism in female castes of Colobopsis sp. nrSA, a Bornean “exploding ant” of the Colobopsis cylindrica group (Hymenoptera: Formicidae). Myrmecological News, 24, 91–106. https://doi.org/10.25849/myrmecol.news_024:091

Lobanov, V., Cai, F., Przylucka, A., Sidarenka, L., Shen, Q., & Druzhinina, I. (2017). Production of Hydrophobins in the two expression systems based on Trichoderma. In Book of Abstracts (pp. 52–53).

Lobanov, V., Przylucka, A., Akcapinar, G. B., Bonazza, K., Mello de Sousa, T. M., Mach-Aigner, A. R., Grothe, H., Reimhult, E., & Druzhinina, I. (2017). Production of Fungal Surface-Active Proteins in Three Microbial Cell Factories. In Book of Abstracts (p. 1).

Marik, T., Szekeres, A., Andersson, M. A., Salkinoja-Salonen, M., Tyagi, C., Leitgeb, B., Vágvölgyi, C., Druzhinina, I. S., & Kredics, L. (2017). Bioactive Peptaibols of Forest-Derived Trichoderma Isolates from Section Longibrachiatum. In M. Lukac, P. Grenni, & M. Gamboni (Eds.), Soil Biological Communities and Ecosystem Resilience (pp. 277–290). Springer International Publishing. https://doi.org/10.1007/978-3-319-63336-7_17

Marik, T., Urban, P., Tyagi, C., Szekeres, A., Leitgeb, B., Vagvölgyi, M., Manczinger, L., Druzhinina, I., Vágvölgyi, C., & Kredics, L. (2017). Diversity Profile and Dynamics of Peptaibols Produced by Green Mould Trichoderma Species in Interactions with Their Hosts Agaricus bisporus and Pleurotus ostreatus. Chemistry and Biodiversity, 14(6).

Miao, Y., Li, P., Li, G., Liu, D., Druzhinina, I., Kubicek, C. P., Shen, Q., & Zhang, R. (2017). Two degradation strategies for overcoming the recalcitrance of natural lignocellulosic xylan by polysaccharides-binding GH1 0 and GH11 xylanases of filamentous fungi. Environmental Microbiology, 19(3), 1054–1064.

Pretzer, C., Druzhinina, I., Amaro, C., Benediktsdottir, E., Hedenström, I., Hervio-Heath, D., Huhulescu, S., Schets, F., Farnleitner, A. H., & Kirschner, A. K. T. (2017). High genetic diversity of Vibrio cholerae in the European lake Neusiedler See is associated with intensive recombination in the reed habitat and the long-distance transfer of strains. Environmental Microbiology, 19(1), 328–344.

Przylucka, A., Akcapinar, G. B., Bonazza, K., Mello de Sousa, T. M., Mach-Aigner, A. R., Reimhult, E., Grothe, H., Kubicek, C. P., & Druzhinina, I. (2017). Expression platforms impact the surface modulating properties of Trichoderma class II hydrophobins. In Abstract Book (p. 113).

Przylucka, A., Akcapinar, G. B., Chenthamara, K., Cai, F., Grujic, M., Karpenko, J., Livoi, M., Shen, Q., Kubicek, C. P., & Druzhinina, I. S. (2017). HFB7 - A novel orphan hydrophobin of the Harzianum and Virens clades of Trichoderma, is involved in response to biotic and abiotic stresses. Fungal Genetics and Biology, 102, 63–76. https://doi.org/10.1016/j.fgb.2017.01.002

Qin, Y., Pan, X., Kubicek, C., Druzhinina, I., Chenthamara, K., Labbé, J., & Yuan, Z. (2017). Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.00158

Rahimi, M., Grujic, M., Pleha, C., Forte, A., Chenthamara-Kariyankode, K., Pretzer, C., Kopchinskiy, A., Pourmehdi, S., Lim, L., Akcapinar, G. B., & Druzhinina, I. (2017). Degradation of synthetic polymers by epyphytic fungi from high canopy of the tropical rain forest. In Book of Abstracts (pp. 94–95).

Rahimi, M., Pretzer, C., Fischer, M., Kopchinskiy, A., Laciny, A., Grujic, M., Abu Salim, K., Lim, L., Chan, C. M., Parich, A., Schuhmacher, R., Zettel, H., & Druzhinina, I. (2017). Microbial Communities in the Nests of Borneo’s “Exploding Ants” Colobopsis cylindrica Complex. In Abstract Book (p. 1).

Yemelyanova, T., Berezhinskiy, V., Przylucka, A., Cai, F., Akcapinar, G. B., Grothe, H., Reimhult, E., & Druzhinina, I. (2017). Hydrophobins as inactive excipients in the pharmaceutical and food industry. In Book of Abstracts (pp. 82–83).

Akcapinar, G. B., Przylucka, A., Cai, F., Mello de Sousa, T. M., Grothe, H., Reimhult, E., Mach-Aigner, A. R., Shen, Q., & Druzhinina, I. (2016). Rational design of novel Trichoderma hydrophobins for industrial applications. In Abstract Book (p. 424).

Atanasova, L., Dubey, M., Grujic, M., Gudmundsson, M., Druzhinina, I., Sandgren, M., Kubicek, C. P., Funck Jensen, D., & Karlsson, M. (2016). Functional characterization of Clonostachys rosea pectate lyase PEL1 in Trichoderma reesei. In Abstract Book (p. 264).

Büchner, R., Hatvani, L., Vágvölgyi, C., Manczinger, L., Druzhinina, I., & Kredics, L. (2016). Epidemiological Survey of a Trichoderma Green Mould Outbreak at a Hungarian Mushroom Farm. In Book of Abstracts (pp. 84–85).

Cai, F., Akcapinar, G. B., Przylucka, A., Pang, G., Shen, Q., & Druzhinina, I. (2016). Hydrophobins of Trichoderma guizhouense inhibit tomato defence system for successful colonization of rhizosphere. In Abstract Book (p. 399).

Chenthamara Kariyankode, K., & Druzhinina, I. (2016). Ecological Genomics of Mycotrophic Fungi. In I. Druzhinina & C. P. Kubicek (Eds.), Environmental and Microbial Relationships (pp. 215–246). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-29532-9_12

Davidson, D. W., Kopchinskiy, A., Abu Salim, K., Grujic, M., Lim, L., Chan, C. M., Jones, T. H., Casamatta, D., Atanasova, L., & Druzhinina, I. (2016). Nutrition of Borneo’s “Exploding” Ants (Hymenoptera: Formicidae: Colobopsis): A Preliminary Assessment. Biotropica, 48(4), 518–527.

Druzhinina, I. (2016). Benefits and potential pitfalls of Trichoderma use for plant protection as revealed from its ecological genomics. In Controle biologico de doencas de plantas (pp. 159–177).

Druzhinina, I. S., & Kubicek, C. P. (2016). Familiar Stranger: Ecological Genomics of the Model Saprotroph and Industrial Enzyme Producer Trichoderma reesei Breaks the Stereotypes. In sima Sariaslani & G. M. Gadd (Eds.), Advances in Applied Microbiology. Volume 95 (Vol. 95, pp. 69–147). Elsevier Inc. https://doi.org/10.1016/bs.aambs.2016.02.001

Druzhinina, I. S., Kopchinskiy, A. G., Kubicek, E. M., & Kubicek, C. P. (2016). A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness. Biotechnology for Biofuels, 9(75). https://doi.org/10.1186/s13068-016-0488-z

Druzhinina, I. S., Kubicek, E. M., & Kubicek, C. P. (2016). Several steps of lateral gene transfer followed by events of “birth-and-death” evolution shaped a fungal sorbicillinoid biosynthetic gene cluster. BMC Evolutionary Biology, 16(269). https://doi.org/10.1186/s12862-016-0834-6

Druzhinina, I., & Kubicek, C. P. (Eds.). (2016). Environmental and Microbial Relationships IV. Springer International Publishing.

Druzhinina, I., & Kubicek, P. C. (2016). Volume Preface. In I. Druzhinina & C. P. Kubicek (Eds.), Environmental and Microbial Relationships (pp. 11–13). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-29532-9

Druzhinina, I., Atanasova, L., Chenthamara-Kariyankode, K., Grujic, M., Henrissat, B., Zhang, J., Shen, Q., Grigoriev, I., & Kubicek, C. P. (2016). Horizontal gene transfers drove the mycoparasite Trichoderma to adapt to saprotrophy and cellulase production. In Abstract Book (p. 70).

Fischer, M., Parich, A., Kopchinskiy, A., Zettel, H., Laciny, A., Pretzer, C., Abu Salim, K., Druzhinina, I., & Schuhmacher, R. (2016). Cuticular hydrocarbon profiles of Borneo’s “exploding ants” and their correlation with ant behavior, Ants 2016-Ants and their biotic environment. An International Symposium at the University of Munich (LMU) and the Munich Botanical Garden, München, Germany.

Fischer, M., Parich, A., Kopchinskiy, A., Zettel, H., Laciny, A., Pretzer, C., Abu Salim, K., Druzhinina, I., & Schuhmacher, R. (2016). GC-MS based metabolomics of Borneo’s “exploding ants”: headspace solid phase microextraction of mandibular gland content, Ants 2016-Ants and their biotic environment. An International Symposium at the University of Munich (LMU) and the Munich Botanical Garden, München, Germany.

Fischer, M., Parich, A., Kopchinskiy, A., Zettel, H., Laciny, A., Pretzer, C., Abu Salim, K., Druzhinina, I., & Schuhmacher, R. (2016). Voluntary self-sacrifice in “exploding” ants: a mechanism to defend co-evolved microbiomes? Seminar on Analytical Chemistry, Universiti Brunei Darussalam, Darussalam, Brunei, Brunei Darussalam.

Fischer, M., Parich, A., Simader, A. M., Kopchinskiy, A., Zettel, H., Laciny, A., Pretzer, C., Rahimi, M., Abu Salim, K., Druzhinina, I., & Schuhmacher, R. (2016). Untargeted Metabolomics of Borneo’s “Exploding Ants.” In Book of Abstracts (p. 44).

Kirschner, A. K. T., Pretzer, C., Amaro, C., Benediktsdottir, E., Heldenström, I., Hervio-Heath, D., Huhulescu, S., Schets, F., Farnleitner, A. H., & Druzhinina, I. (2016). High micro-diversity of Vibrio cholerae in the Central European lake Neusiedler See is associated with intensive genetic recombination in the reed habitat and the longdistance transfer of strains. In Abstracts (p. 79).

Kirschner, A. K. T., Pretzer, C., Huhulescu, S., Farnleitner, A. H., & Druzhinina, I. (2016). High micro-diversity of Vibrio cholerae in Iake Neusiedler See is associated with intensive genetic recombination in the reed habitat and the long-distance transfer of strains. In Abstracts (p. 64).

Kredics, L., Druzhinina, I., Vágvölgyi, C., & Hatvani, L. (2016). Old and emerging causal agents of mushroom green mould disease. In Book of Abstracts (p. 24).

Laciny, A., Zettel, H., & Druzhinina, I. (2016). Workers, soldiers, and gynes - morphometric characterization and description of the female castes of Camponotus singularis (Smith, 1858) (Hymenoptera, Formicidae). Deutsche Entomologische Zeitschrift, 63(2), 183–193. https://doi.org/10.3897/dez.63.9435

Laciny, A., Zettel, H., Kopchinskiy, A., Druzhinina, I., Pretzer, C., Fischer, M., Parich, A., Schuhmacher, R., Abu Salim, K., & Metscher, B. (2016). Of pests and guests - parasites and nest-mates in colonies of Bornean exploding ants of the Colobopsis cylindrica complex, Ants 2016-Ants and their biotic environment. An International Symposium at the University of Munich (LMU) and the Munich Botanical Garden, München, Germany.

Pretzer, C., Kopchinskiy, A., Laciny, A., Davidson, D. W., Lim, L., Chan, C. M., Zettel, H., Fischer, M., Parich, A., Schuhmacher, R., Abu Salim, K., & Druzhinina, I. (2016). Revealing molecular evolution of Borneo’s exploding ants of the Colobopis cylindrica complex, Ants 2016-Ants and their biotic environment. An International Symposium at the University of Munich (LMU) and the Munich Botanical Garden, München, Germany.

Qin, Y., Druzhinina, I. S., Pan, X., & Yuan, Z. (2016). Microbially Mediated Plant Salt Tolerance and Microbiome-based Solutions for Saline Agriculture. Biotechnology Advances, 34(7), 1245–1259. https://doi.org/10.1016/j.biotechadv.2016.08.005

Rahimi, M., & Druzhinina, I. (2016). Impact of natural associated bacteria on mycoparasitism of Trichoderma and it’s relevance for plant protection. In Abstract Book (p. 269).

Rahimi, M., Pretzer, C., Forte, A., Kopchinskiy, A., Davidson, D. W., Laciny, A., Grujic, M., Abu Salim, K., Lim, L., Chan, C. M., Fischer, M., Parich, A., Schuhmacher, R., Zettel, H., & Druzhinina, I. (2016). Microbial diversity in the habitat of Borneo’s “Exploding” Ants, Ants 2016-Ants and their biotic environment. An International Symposium at the University of Munich (LMU) and the Munich Botanical Garden, München, Germany.

Ramoni, J., & Seiboth, B. (2016). 6 Degradation of Plant Cell Wall Polymers by Fungi. In I. Druzhinina & P. C. Kubicek (Eds.), Environmental and Microbial Relationships (Vol. 4, pp. 127–148). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-29532-9_6

Urban, P., Marik, T., Szekeres, A., Manczinger, L., Hatvani, L., Vágvölgyi, C., Druzhinina, I., Miao, Y., Fekete, C., & Kredics, L. (2016). Peptaibol Production ofthe Mushroom Green Mould Trichoderma pleuroti: from the Genomic Background to Compound Profiles. In Book of Abstracts (p. 38).

Urban, P., Miao, Y., Fekete, C., Hatvani, L., Büchner, R., Vágvölgyi, C., Druzhinina, I., & Kredics, L. (2016). Complete Genome Sequence of the Green Mould Pathogen Trichoderma pleuroti. In Book of Abstracts (pp. 51–52).

Urban, P., Miao, Y., Fekete, C., Schönhardt, K., Valasek, A., Hatvani, L., Manczinger, L., Vágvölgyi, C., Druzhinina, I., & Kredics, L. (2016). Complete genome sequence of Trichoderma aggressivum f. europaeum, the causal agent of green mould disease in Agaricus cultivation. In Book of Abstracts (p. 62).

Yang, D., Miao, Y., Kubicek, C. P., Grigoriev, I., Kopchinskiy, A., Zhang, J., Atanasova, L., Zhang, R., Shen, Q., & Druzhinina, I. (2016). trichoCODE : a modal genome annotation pipeline for Trichoderma. In Abstract Book (p. 470).

Yuan, Z., Druzhinina, I. S., Labbé, J., Redman, R., Qin, Y., Rodriguez, R., Zhang, C., Tuskan, G. A., & Lin, F. (2016). Specialized Microbiome of a Halophyte and its Role in Helping Non-Host Plants to Withstand Salinity. Scientific Reports, 6(32467). https://doi.org/10.1038/srep32467

Zhang, J., Akcapinar, G. B., Atanasova, L., Rahimi, M., Przylucka, A., Yang, D., Kubicek, C. P., Zhang, R., Shen, Q., & Druzhinina, I. (2016). The neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for mycotrophy and self-defence. Environmental Microbiology, 18(2), 580–597.

Zhang, J., Miao, Y., Atanasova, L., Yang, D., Rahimi, M., Druzhinina, I., & Shen, Q. (2016). The function of reactive oxygen species in the mycoparasitic attack of Trichoderma guizhouense on Fusarium oxysporum. In Abstract Book (p. 320).

de Man, T., Stajich, J., Kubicek, C. P., Teiling, C., Chenthamara-Kariyankode, K., Atanasova, L., & Druzhinina, I. (2016). Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture. Proceedings of the National Academy of Sciences, 113(13), 3567–3572.

Akcapinar, G. B., Kappel, L., Sezerman, O. U., & Seidl-Seiboth, V. (2015). Molecular diversity of LysM carbohydrate‑binding motifs in fungi. Current Genetics, 61(2), 103–113. https://doi.org/10.1007/s00294-014-0471-9

Akcapinar, G. B., Przylucka, A., Cai, F., Shen, Q., Kubicek, C. P., & Druzhinina, I. (2015). Modulation of surface properties of materials by engineered hydrophobins for effective biocatalysis. In Biotrans 2015 (p. 559).

Atanasova, L., Chenthamara-Kariyankode, K., Grujic, M., Aerts, A., Kuo, A., Grigoriev, I., Kubicek, C. P., & Druzhinina, I. (2015). Evolution and diversification of Trichoderma CAZome based on the genome of eight species. In Abstracts Book. EMBO Conference 2015 - Exploring the genomic complexity and diversity of eukaryotes, Sant Feliu de Guixols, Spain.

Bonazza, K., Gaderer, R., Neudl, S., Przylucka, A., Allmaier, G., Druzhinina, I. S., Grothe, H., Friedbacher, G., & Seidl-Seiboth, V. (2015). The fungal cerato-platanin protein EPL1 forms highly ordered layers at hydrophobic/hydrophilic interfaces. Soft Matter, 11(9), 1723–1732. https://doi.org/10.1039/c4sm02389g

Druzhinina, I., Yang, D., Kubicek, C. P., Grigoriev, I., Kopchinskiy, A., Zhang, J., Atanasova, L., Zhang, R., & Shen, Q. (2015). trichoCODE: A Modal Genome Annotation Pipeline for Good Fungi from the Genus Trichoderma. In Abstracts (p. 37).

Kirschner, A. K. T., Pretzer, C., Amaro, C., Benediktsdottir, E., Hedenström, I., Hervio-Heath, D., Huhulescu, S., Schets, C., Farnleitner, A. H., & Druzhinina, I. (2015). Assessment of Vibrio cholerae microdiversity in lake Neusiedler See, Austria - A pan-European perspective. In http://www.vibrionet.de/news/2015_workshop.html (p. 1).

Kubicek, C. P., & Druzhinina, I. (2015). Trichoderma Mycoses and Mycotoxins. In R. R. M. Paterson & N. Lima (Eds.), Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi (pp. 521–538). CRC Press.

Marik, T., Szekeres, A., Druzhinina, I., Vágvölgyi, C., & Kredics, L. (2015). Sequential diversity of peptaibol profiles of Trichoderma species causing green mould disease of cultivated mushrooms. 17#^{th} International Congress of the Hungarian Society for Microbiology, Budapest, Hungary.

Marik, T., Szekeres, A., Druzhinina, I., Vágvölgyi, C., & Kredics, L. (2015). Sequential diversity of peptaibol profiles of Trichoderma species causing green mould disease of cultivated mushrooms. Acta Microbiologica et Immunologica Hungarica, 62(Supplement), 180–181.

Mpika, J., Kébé Boubacar, I., Issali, A. E., N´Guessan, K. F., Druzhinina, I., Komon-Zelazowska, M., Kubicek, C. P., & Aké, S. (2015). Efficacité au Champ de Quatre Espèces de Trichoderma dans la Lutte Biologique Contre Phytophthora Palmivora, Agent de la Pourriture Brune des Cabosses du Cacaoyer en Côte d’Ivoire. European Journal of Scientific Research, 134(2), 158–172.

Przylucka, A., Akcapinar, G. B., Boraca, M., Kubicek, C. P., & Druzhinina, I. (2015). Hydrophobins of Trichoderma as immobilizers of enzymes on polymeric surfaces for biocatalysis. In Biotrans 2015 (p. 525).

Ribitsch, D., Herrero-Acero, E., Przylucka, A., Zitzenbacher, S., Marold, A., Gamerith, C., Tscheließnig, R., Jungbauer, A., Rennhofer, H., Lichtenegger, H., Amenitsch, H., Bonazza, K., Kubicek, C. P., Druzhinina, I., & Gübitz, G. (2015). Enhanced Cutinase-Catalyzed Hydrolysis of Polyethylene Terephthalate by Covalent Fusion to Hydrophobins. Applied and Environmental Microbiology, 81(11), 3586–3592.

Szekeres, A., Kredics, L., Marik, T., Vagvölgyi, M., Bencsik, O., Kecskemeti, A., Leitgeb, B., Atanasova, L., Druzhinina, I., & Vágvölgyi, C. (2015). Purification and structural elucidation strategy of peptaibols produced by Trichoderma strains. In http://fems-microbiology.kenes.com (p. 1).

Szekeres, A., Kredics, L., Marik, T., Vagvölgyi, M., Bencsik, O., Kecskemeti, A., Leitgeb, B., Atanasova, L., Druzhinina, I., & Vágvölgyi, C. (2015). Verification of peptaibol production ability of a Trichoderma strain selected by a bacterium-based screening method. In http://fems-microbiology.kenes.com (p. 1).

Tamas, M., Szekeres, A., Atanasova, L., Druzhinina, I., Andersson, M. A., Salkinoja-Salonen, M., Leitgeb, B., Vágvölgyi, C., & Kredics, L. (2015). New bioactive trichobrachin-like peptaibols detected in natural forest habitatderived isolates from the Longibrachiatum section of the filamentous fungal genus Triehederma. In Proceedings of the 3#^{rd} Annual Meeting (p. 55).

Yang, D., Kubicek, C. P., Miao, Y., Grigoriev, I., Kopchinskiy, A., Zhang, J., Atanasova, L., Zhang, R., Shen, Q., & Druzhinina, I. (2015). trichoCODE: A modal genome annotation pipeline for Trichoderma. In Abstracts Book. EMBO Conference 2015 - Exploring the genomic complexity and diversity of eukaryotes, Sant Feliu de Guixols, Spain.

Yang, D., Pomraning, K. R., Kopchinskiy, A., Karimi Aghcheh, R., Atanasova, L., Chenthamara-Kariyankode, K., Baker, S. E., Zhang, R., Shen, Q., Freitag, M., Kubicek, C. P., & Druzhinina, I. (2015). Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei. Genome Announcements, 3(4), 1.

Zhang, J., Akcapinar, G. B., Atanasova, L., Rahimi, M., Przylucka, A., Yang, D., Kubicek, C. P., Zhang, R., Shen, Q., & Druzhinina, I. (2015). The M35 neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for predation on Fusarium oxysporum and is involved in biotrophic or antagonistic interactions with some other fungi. In Abstract Book (p. 181).

Atanasova, L. (2014). Ecophysiology of Trichoderma in Genomic Perspective. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 25–40). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00002-3

Atanasova, L., Grandits, M., Kubicek, C. P., & Druzhinina, I. (2014). Sex modulates long distance dispersal and antagonistic potential of Trichoderma reesei. In Book of Abstracts (p. 289).

Atanasova, L., Yang, D., Zhang, J., Kopchinskiy, A., Baker, S. E., Grigoriev, I., Kubicek, C. P., & Druzhinina, I. (2014). Genomic portrayal of opportunistic Trichoderma species. In Biology of pathogenic fungi (p. 18).

Bischof, R., & Seiboth, B. (2014). Molecular Tools for Strain Improvement of Trichoderma spp. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 179–191). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00012-6

Chenthamara-Kariyankode, K., Atanasova, L., Yang, D., Zhang, J., Kopchinskiy, A., Grigoriev, I., Kubicek, C. P., Shen, Q., & Druzhinina, I. (2014). Phylogenomics of Trichoderma. In Book of Abstracts (p. 184).

Derntl, C., Mach-Aigner, A. R., & Mach, R. L. (2014). Trichoderma Proteins with Disruption Activity on Cellulosic Substrates. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 309–317). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00021-7

Druzhinina, I. (2014). Genomic boundaries of Trichoderma opportunism. In TG2014 Programme & Abstracts (p. 21).

Gupta, V. K., Schmoll, M., Herrera-Estrella, A., Upadhyay, R. S., Druzhinina, I., & Tuohy, M. G. (Eds.). (2014). Biotechnology and Biology of Trichoderma. Elsevier B.V.

Hatvani, L., Vágvölgyi, C., Kredics, L., & Druzhinina, I. (2014). DNA Barcode for Species Identification in Trichoderma. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 41–55). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00003-5

Hori, C., Ishida, T., Igarashi, K., Samejima, M., Suzuki, H., Master, E., Ferreira, P., Ruiz-Dueñas, F., Held, B., Canessa, P., Larrondo, L. F., Schmoll, M., Druzhinina, I., Kubicek, P. C., Gaskell, J. A., Kersten, P., St. John, F., Glasner, J., Sabat, G., & Cullen, D. (2014). Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood. PLoS Genetics, 10(12), Article 1004759. https://doi.org/10.1371/journal.pgen.1004759

Karimi Aghcheh, R., Nemeth, Z., Atanasova, L., Ghassemi, S., Aquino, B., Druzhinina, I., Fekete, E., Seiboth, B., Karaffa, L., & Kubicek, C. P. (2014). Vel1 of Trichoderma reesei has an auxiliary role in in cellulase gene expression and is required for sexual and asexual development. In Book of Abstracts (p. 152).

Karimi Aghcheh, R., Németh, Z., Atanasova, L., Fekete, E., Paholcsek, M., Sándor, E., Aquino, B., Druzhinina, I. S., Karaffa, L., & Kubicek, C. P. (2014). The VELVET A Orthologue VEL1 of Trichoderma reesei Regulates Fungal Development and Is Essential for Cellulase Gene Expression. PLoS ONE, 9(11), e112799. https://doi.org/10.1371/journal.pone.0112799

Kirschner, A. K. T., Pretzer, C., Farnleitner, A. H., & Druzhinina, I. (2014). Assessment of environmental Vibrio cholerae microdiversity via multilocus-sequence analysis. In www.efdelegates.ed.ac.uk (p. 1).

Kredics, L., Hatvani, L., Naeimi, S., Körmöczi, P., Manczinger, L., Vágvölgyi, C., & Druzhinina, I. (2014). Biodiversity of the Genus Hypocrea/Trichoderma in Different Habitats. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 3–24). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00001-1

Kubicek, C. P. (2014). Foreword. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (p. xiii). Elsevier B.V.

Livoi, M., Uzbas, F., Przylucka, A., Atanasova, L., Kubicek, C. P., & Druzhinina, I. (2014). Ecophysiological Roles of the Two Novel Class II Hydrophobins (HFB4 and HFB7) from Trichoderma virens. In Book of Abstracts (p. 118).

Pflieger, W. P., Atanasova, L., Karanyicz, E., Sipiczki, M., Bond, U., Druzhinina, I., Sterflinger, K., & Lopandic, K. (2014). Generation of New Genotypic and Phenotypic Features in Artificial and Natural Yeast Hybrids. Food Technology and Biotechnology, 52(1), 46–57.

Przylucka, A., Livoi, M., Espino Tenorio de Rammer, L., Gasser, B., Atanasova, L., Mattanovich, D., Kubicek, C. P., & Druzhinina, I. (2014). Recombinant production of class II hydrophobins from Trichoderma virens by three microbial cell factories. In Book of Abstracts (p. 311).

Przylucka, A., Ribitsch, D., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2014). Hydrophobins class I versus class II: Trichoderma virens HFB9a and HFB9b (class I) are more effective as enhancing agents in enzymatic PET hydrolysis and surface modulators compared to HFB4 and HFB7 (class II). ECB 16 - 16th European Congress on Biotechnology, Edinburgh, United Kingdom of Great Britain and Northern Ireland (the).

Przylucka, A., Ribitsch, D., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2014). Hydrophobins class I versus class II: Trichoderma virens HFB9a and HFB9b (class I) are more effective as enhancing agents in enzymatic PET hydrolysis and surface modulators compared to HFB4 and HFB7 (class II). New Biotechnology, 31, S190. https://doi.org/10.1016/j.nbt.2014.05.935

Reithner, B., & Mach, R. L. (2014). Genes from Trichoderma as a Source for Improving Plant Resistance to Fungal Pathogen. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 505–513). Elsevier B.V.

Schmoll, M., Seiboth, B., Druzhinina, I., & Kubicek, C. P. (2014). Genomics Analysis of Biocontrol Species and Iudustrial Enzyme Producers from the Genus Trichoderma. In Fungal Genomics, The Mycota, Vol. XIII (pp. 233–264). Springer-Verlag.

Seidl-Seiboth, V., Ihrmark, K., Druzhinina, I., & Karlsson, M. (2014). Molecular Evolution of Trichoderma Chitinases. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 67–78). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00005-9

Zeilinger, S., & Gruber, S. (2014). Insights into Signaling Pathways of Antagonistic Trichoderma Species. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 465–476). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00034-5

Zhang, J., Yang, D., Atanasova, L., Zhang, R., Kubicek, C. P., Druzhinina, I., & Shen, Q. (2014). Molecular mechanisms in hyperparasitism of T. guizhouense NJAU 4742 on Fusarium oxysporum f. sp. cubense 4 revealed through the whole genome-wide transcriptional response. In Book of Abstracts (p. 180).

Aghcheh, R. K., Druzhinina, I. S., & Kubicek, C. P. (2013). The Putative Protein Methyltransferase LAE1 of Trichoderma atroviride Is a Key Regulator of Asexual Development and Mycoparasitism. PLoS ONE, 8(6), e67144. https://doi.org/10.1371/journal.pone.0067144

Atanasova, L., Chenthamara-Kariyankode, K., Kopchinskiy, A., Baker, S. E., Grigoriev, I., Pomraning, K. R., Freitag, M., Kubicek, C. P., & Druzhinina, I. (2013). A unique genomic architecture of Trichoderma species from Section Longibrachiatum. In Comparative Genomics of Eukaryotic Microorganisms: Complexity Patterns in Eukaryotic Genomes (pp. 83–84).

Atanasova, L., Crom, S. L., Gruber, S., Coulpier, F., Seidl-Seiboth, V., Kubicek, C. P., & Druzhinina, I. S. (2013). Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism. BMC Genomics, 14(121). https://doi.org/10.1186/1471-2164-14-121

Atanasova, L., Davidson, D. W., Kamariah, A. S., & Druzhinina, I. (2013). Diversity and physiology of Trichoderma associated with Burholderia spp. in the nests of Borneo’s exploding ants. In BAGECO 12 - Bacterial Genetics and Ecology (pp. 89–90).

Atanasova, L., Druzhinina, I., & Jaklitsch, W. M. (2013). Two Hundred Trichoderma Species Recognized on the Basis of Molecular Phylogeny. In P. Mukherjee, B. A. Horwitz, U. S. Singh, M. Mukherjee, & M. Schmoll (Eds.), Trichoderma Biology and Applications (pp. 10–42). CABI.

Atanasova, L., Knox, B. P., Kubicek, C. P., Baker, S. E., & Druzhinina, I. (2013). The Trichoderma reesei polyketide synthase gene pks1 is necessary for yellow-green pigmentation of conidia an is involved in the establishment of environmental fitness. In 27#^{th} Fungal Genetics Conference (p. 59).

Atanasova, L., Knox, B. P., Kubicek, C. P., Druzhinina, I., & Baker, S. E. (2013). The Polyketide Synthase Gene pks4 of Trichoderma reesei Provides Pigmentation and Stress Resistance. Eukaryotic Cell, 12(11), 1499–1508.

Chenthamara-Kariyankode, K., Atanasova, L., Zhang, J., Kopchinskiy, A., LaButti, K., Kuo, A., Grigoriev, I., Kubicek, C. P., Shen, Q., & Druzhinina, I. (2013). Phylogenomics of Trichoderma. In Comparative Genomics of Eukaryotic Microorganisms: Complexity Patterns in Eukaryotic Genomes (pp. 90–91).

Druzhinina, I. (2013). Trichoderma in Rhizosphere: Opportunists and Commensals. EMSL 2013 User Meeting, Richland, Washington, United States of America (the).

Druzhinina, I., & Kubicek, C. P. (2013). Ecological Genomics of Trichoderma. In The Ecological Genomics of Fungi (pp. 89–116). Wiley - Blackwell.

Druzhinina, I., Karimi Aghcheh, R., Atanasova, L., & Kubicek, C. P. (2013). Developmental regulation and cellulase gene expression in Trichoderma reesei. In 27#^{th} Fungal Genetics Conference (p. 61).

Druzhinina, I., Kopchinskiy, A., & Kubicek, C. P. (2013). Comparative genomics of Trichoderma: a clue how to become an opportunist. In Comparative Genomics of Eukaryotic Microorganisms: Complexity Patterns in Eukaryotic Genomes (pp. 31–32).

Erper, I., Turkkan, M., Atanasova, L., Druzhinina, I., Karaca, G., & Cebi-Kilicoglu, M. (2013). Integrated assessment of the mycoparasitic and phytostimulating properties of Trichoderma strains against Rhizoctonia solani. Bulgarian Journal of Agricultural Science, 19(4), 737–743.

Espino Tenorio de Rammer, L., Ribitsch, D., Przylucka, A., Marold, A., Greimel, K. J., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2013). Two Novel Class II Hydrophobins from Trichoderma spp. Stimulate Ezymatic Hydrolysis of Poly(Ethylene Terephthalate) when Expressed as Fusion Proteins. Applied and Environmental Microbiology, 79(14), 4230–4238.

Karaffa, L., Coulier, L., Fekete, E., Overkamp, K. M., Druzhinina, I. S., Mikus, M., Seiboth, B., Novák, L., Punt, P. J., & Kubicek, C. P. (2013). The intracellular galactoglycome in Trichoderma reesei during growth on lactose. Applied Microbiology and Biotechnology, 97(12), 5447–5456. https://doi.org/10.1007/s00253-012-4667-y

Karaffa, L., Coulier, L., Fekete, E., Overkamp, K. M., Druzhinina, I., Mikus, M., Seiboth, B., Novak, L., Punt, P. J., & Kubicek, C. P. (2013). Analysis of the intracellular galactoglycom of Trichoderma reesei grown on lactose. In 27#^{th} Fungal Genetics Conference (p. 78).

Lehner, S., Atanasova, L., Neumann, N. K., Krska, R., Lemmens, M., Druzhinina, I., & Schuhmacher, R. (2013). Isotope-Assisted Screening for Iron-Containing Metabolites Reveals a High Degree of Diversity among Known and Unknown Siderophores Produced by Trichoderma spp. Applied and Environmental Microbiology, 79(1), 18–31.

López-Quintero, C. A., Atanasova, L., Franco-Molano, A. E., Gams, W., Komon-Zelazowska, M., Theelen, B., Müller, W. H., Boekhout, T., & Druzhinina, I. (2013). DNA barcoding survey of Trichoderma diversity in soil and litter of the Colombian lowland Amazonian rainforest reveals Trichoderma strigosellum sp. nov. and other species. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 104(5), 657–674. https://doi.org/10.1007/s10482-013-9975-4

Mulaw, T., Druzhinina, I., Kubicek, C., & Atanasova, L. (2013). Novel Endophytic Trichoderma spp. Isolated from Healthy Coffea arabica Roots are Capable of Controlling Coffee Tracheomycosis. Diversity, 5(4), 750–766. https://doi.org/10.3390/d5040750

Pummer, B. G., Atanasova, L., Bauer, H., Bernardi, J., Chazallon, B., Druzhinina, I., & Grothe, H. (2013). Ice nucleation of bioaerosols - a resumee. In Geophysical Research Abstracts. EGU General Assembly 2013, Vienna, Austria.

Pummer, B. G., Atanasova, L., Bauer, H., Bernardi, J., Druzhinina, I. S., & Grothe, H. (2013). Spores of most common airborne fungi reveal no ice nucleation activity. Biogeosciences Discussions, 10(6), 10125–10141. https://doi.org/10.5194/bgd-10-10125-2013

Pummer, B. G., Atanasova, L., Bauer, H., Bernardi, J., Druzhinina, I. S., Fröhlich-Nowoisky, J., & Grothe, H. (2013). Spores of many common airborne fungi reveal no ice nucleation activity in oil immersion freezing experiments. Biogeosciences, 10(12), 8083–8091. https://doi.org/10.5194/bg-10-8083-2013

Pummer, B. G., Atanasova, L., Bauer, H., Bernardi, J., Druzhinina, I., Müller, C., Schmitt-Kopplin, P., Whitmore, K., & Grothe, H. (2013). Stress treatment of pollen and fungal spores - what are the impacts on IN activity? In Workshop - Atmospheric Ice Nucleation - Book of Abstracts. ESF-Workshop - Atmospheric Ice Nucleation, Wien, Austria.

Zhang, J., Zhang, R., Druzhinina, I., & Shen, Q. (2013). Mechanistic investigation of Trichoderma cf. harzianum SQR-TO37 mycoparasitism against Fusarium oxysporum f.sp. cubense 4 (banana wilt disease). In 27#^{th} Fungal Genetics Conference (p. 258).

Druzhinina, I., Komon-Zelazowska, M., Ismaiel, A., Jaklitsch, W. M., Mullaw, T., Samuels, G. J., & Kubicek, C. P. (2012). Molecular phylogeny and species delimitation in the section Longibrachiatum of Trichoderma. Fungal Genetics and Biology, 49(5), 358–368. https://doi.org/10.1016/j.fgb.2012.02.004

Pummer, B. G., Atanasova, L., Bauer, H., Bernardi, J., Druzhinina, I., & Grothe, H. (2012). Study on the ice nucleation activity of fungal spores (Ascomycota and Basidiomycota). EGU2012-2402.

Atanasova, L., Le Crom, S., Gruber, S. G., Coulpier, F., Seidl-Seiboth, V., Druzhinina, I., & Kubicek, C. P. (2012). Functional diversity of Trichoderma mycoparasitism. In Meeting Abstracts (p. 129).

Degenkolb, T., Karimi Aghcheh, R., Dieckmann, R., Neuhof, T., Baker, S. E., Druzhinina, I., Kubicek, C. P., Brückner, H., & von Döhren, H. (2012). The Production of Multiple Small Peptaibol Families by Single 14-Module Peptide Synthetases in Trichoderma/Hypocrea. CHEMISTRY & BIODIVERSITY, 9(3), 499–535.

Druzhinina, I. (2012). Ecological Genomics of the Opportunistic Fungus Trichoderma. In Seventh Annual DOE Joint Genome Institute User Meeting (p. 27).

Druzhinina, I. S., Shelest, E., & Kubicek, C. P. (2012). Novel traits of Trichoderma predicted through the analysis of its secretome. FEMS Microbiology Letters, 337(1), 1–9. https://doi.org/10.1111/j.1574-6968.2012.02665.x

Espino Tenorio de Rammer, L., Komon-Zelazowska, M., Ribitsch, D., Greimel, K. J., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2012). The HFB4 family : novel class II hydrophobins of Trichoderma with universal infrageneric distribution and potential for industrial applications. In Meeting Abstracts (p. 254).

Friedl, M. A., & Druzhinina, I. S. (2012). Taxon-specific metagenomics of Trichoderma reveals a narrow community of opportunistic species that regulate each other ’s development. MICROBIOLOGY-SGM, 158(1), 69–83. https://doi.org/10.1099/mic.0.052555-0

Karimi Aghcheh, R., Druzhinina, I., Atanasova, L., & Kubicek, C. P. (2012). Conidiation is the major target of LAE1 function in Trichoderma atroviride. In Meeting Abstracts (p. 94).

Lehner, S., Neumann, N. K., Atanasova, L., Krska, R., Lemmens, M., Druzhinina, I., & Schuhmacher, R. (2012). Targeted screening and structure characterization of iron-containing metabolites (siderophores) from Trichoderma spp., A. alternata and A. niger using LC-HR-MS/MS on an LTQ Orbitrap XL. In Biocontrol of plant pathogens in sustainable agriculture (p. 55).

Marzouk, M. A., Ali, M. . I. A., Yasser, M. M., Mousa, A. S., & Druzhinina, I. (2012). Antifungal potential and ecophysiological characterization of indigenous Trichoderma spp. isolated from Nile Valley (Egypt). In Meeting Abstracts (p. 173).

Mukherjee, P. K., Buensanteai, N., Moran-Diez, M. E., Druzhinina, I. S., & Kenerley, C. M. (2012). Functional analysis of non-ribosomal peptide synthetases (NRPSs) in Trichoderma virens reveals a polyketide synthase (PKS)/NRPS hybrid enzyme involved in the induced systemic resistance response in maize. Microbiology, 158(1), 155–165. https://doi.org/10.1099/mic.0.052159-0

Przylucka, A., Espino Tenorio de Rammer, L., Kubicek, C. P., & Druzhinina, I. (2012). A novel group of class II hydrophobins from Trichoderma with biased occurrence. In Meeting Abstracts (p. 254).

Pummer, B. G., Atanasova, L., Bauer, H., Bernardi, J., Druzhinina, I., & Grothe, H. (2012). Determining the ice nucleation of fungal spores in the oil immersion mode. Workshop: Bioaerosol Effects on Clouds, Colorado, United States of America (the).

Pummer, B. G., Atanasova, L., Bauer, H., Bernardi, J., Druzhinina, I., & Grothe, H. (2012). Search for biogenic ice nucleation activity (INA) - a study on Snomax, pollen, moulds and mushrooms. 16th International Conference on Clouds and Precipitation, Leipzig, Germany.

Samuels, G. J., Ismaiel, A., Mulaw, T. B., Szakacs, G., Druzhinina, I. S., Kubicek, C. P., & Jaklitsch, W. M. (2012). The Longibrachiatum Clade of Trichoderma : a revision with new species. Fungal Diversity, 55(1), 77–108. https://doi.org/10.1007/s13225-012-0152-2

Sobieralski, K., Siwulski, M., Komon-Zelazowska, M., Blaszczyk, L., Sas-Golak, I., & Fruzynska-Jozwiak, D. (2012). Impact of Trichoderma pleurotum and T. pleuroticola isolates on yielding of Pleurotus ostreatus (Fr.) Kumm. Journal of Plant Protection Research, 52(1), 165–168.

Atanasova, L., Le Crom, S., Gruber, S. G., Coulpier, F., Seidl, V., Druzhinina, I., & Kubicek, C. P. (2011). The transcriptional profile of Trichoderma mycoparasitism. In Conference Series (p. 102).

Druzhinina, I. (2011). Ecological genomics for domestication of Trichoderma. In Conference Series (p. 115).

Druzhinina, I. (2011). Molecular ecology of mycoparasitic fungus Hypocrea/Trichoderma. In Abstracts (pp. 142–143).

Druzhinina, I. S., Seidl-Seiboth, V., Herrera-Estrella, A., Horwitz, B. A., Kenerley, C. M., Monte, E., Mukherjee, P. K., Zeilinger, S., Grigoriev, I. V., & Kubicek, C. P. (2011). Trichoderma : the genomics of opportunistic success. Nature Reviews Microbiology, 9(10), 749–759. https://doi.org/10.1038/nrmicro2637

Gal-Hemed, I., Atanasova, L., Komon-Zelazowska, M., Druzhinina, I., Viterbo, A., & Yarden, O. (2011). Marine Isolates of Trichoderma spp. as Potential Halotolerant Agents of Biological Control for Arid-Zone Agriculture. Applied and Environmental Microbiology, 77(15), 5100–5109.

Hawksworth, D. L., Crous, P. W., Redhead, S. A., Reynolds, D. R., Samson, R. A., Seifert, K. A., Taylor, J. W., Wingfield, M. J., Abaci, Ö., Aime, C., Asan, A., Bai, F.-Y., de Beer, Z. W., Begerow, D., Berikten, D., Boekhout, T., Buchanan, P. K., Burgess, T., Buzina, W., … Zhang, N. (2011). The Amsterdam Declaration on Fungal Nomenclature. IMA FUNGUS, 2(1), 105–111. https://doi.org/10.5598/imafungus.2011.02.01.14

Komon-Zelazowska, M., Kopchinskiy, A., Kubicek, C. P., & Druzhinina, I. (2011). Genus-wide screening for class II hydrophobins in Hypocrea/Trichoderma using phylogenetic and metagenomic approaches. Alpbacher Universitätenforum, Alpbach, Austria.

Komon-Zelazowska, M., Kopchinskiy, A., Kubicek, C. P., & Druzhinina, I. (2011). Genus-wide screening for class II hydrophobins in Hypocrea/Trichoderma using phylogenetic and metagenomic approaches. In Abstracts (pp. 302–303).

Kubicek, C. P., Herrera-Estrella, A., Seidl-Seiboth, V., Martinez, D. A., Druzhinina, I., Thon, M., Zeilinger, S., Casas-Flores, S., Horwitz, B. A., Mukherjee, P. K., Mukherjee, M., Kredics, L., Alcaraz, L. D., Aerts, A., Antal, Z., Atanasova, L., Cervantes-Badillo, M. G., Challacombe, J., Chertkov, O., … Grigoriev, I. V. (2011). Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology, 12, Article R40. https://doi.org/10.1186/gb-2011-12-4-r40

Lehner, S., Neumann, N. K., Atanasova, L., Krska, R., Lemmens, M., Druzhinina, I., & Schuhmacher, R. (2011). Metabolic profiling of iron-containing metabolites secreted by Trichoderma using LC-HR-MS/MS. Metabomeeting 2011, Helsinki, Finland.

Lopandic, K., Bond, U., Atanasova, L., Druzhinina, I., & Sterflinger, K. (2011). Molecular characterisation of the yeast interspecies hybrids. 15#^{th} International Biodeterioration & Biodegredation Symposium, Wien, Austria.

Marzouk, M. A., Ali, M. . I. A., Yasser, M. M., Mousa, A. S., Kubicek, C. P., & Druzhinina, I. (2011). Molecular ecology of Trichoderma in Nile river basin and surrounding ecosystems in Egypt. In Abstracts (pp. 254–255).

Metz, B., Seidl-Seiboth, V., Haarmann, T., Kopchinskiy, A., Lorenz, P., Seiboth, B., & Kubicek, C. P. (2011). Expression of Biomass-Degrading Enzymes Is a Major Event during Conidium Development in Trichoderma reesei. Eukaryotic Cell, 10(11), 1527–1535.

Portnoy, T., Margeot, A., Linke, R., Atanasova, L., Fekete, E., Sándor, E., Hartl, L., Karaffa, L., Druzhinina, I. S., Seiboth, B., Le Crom, S., & Kubicek, C. P. (2011). The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei : a master regulator of carbon assimilation. BMC Genomics, 12(269). https://doi.org/10.1186/1471-2164-12-269

Atanasova, L., & Druzhinina, I. (2010). Global nutrient profiling by Phenotype MicroArrays : a tool complementing genomic and proteomic studies in conidial fungi. JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B, 11(3), 151–168.

Atanasova, L., & Druzhinina, I. (2010). Trichoderma in Its Environment : Ecophysiological Aspects, Aerial Transfer and in Situ DNA Barcoding of Infrageneric Communities. In IMC9 The Biology of Fungi. 9#^{th} International Mycological Congress, Edinburgh, UK, EU.

Atanasova, L., Davidson, D. W., Kamariah, A. S., Anderson, N. F., & Druzhinina, I. (2010). Diversity and physiology of Trichoderma associated with nests of Borneo’s exploding ants. In IMC9 The Biology of Fungi. 9#^{th} International Mycological Congress, Edinburgh, UK, EU.

Atanasova, L., Friedl, M., Bauer, H., Puxbaum, H., Kubicek, C. P., & Druzhinina, I. (2010). Metagenomic study of air borne diversity of mycoparasitic fungus Trichoderma (anamorph Hypocrea). In Biospektrum (p. 38).

Atanasova, L., Jaklitsch, W. M., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2010). A new cellulase producing species Trichoderma parareesei nom. prov. reveals high antagonistic potential against soil and plant pathogenic fungi. In IOBC/WPRS Working Group (p. 82).

Atanasova, L., Jaklitsch, W. M., Komoń-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. S. (2010). Clonal Species Trichoderma parareesei sp. nov. Likely Resembles the Ancestor of the Cellulase Producer Hypocrea jecorina/T.reesei. Applied and Environmental Microbiology, 76(21), 7259–7267. https://doi.org/10.1128/aem.01184-10

Belayneh Mulaw, T., Kubicek, C., & Druzhinina, I. (2010). The Rhizosphere of Coffea Arabica in Its Native Highland Forests of Ethiopia Provides a Niche for a Distinguished Diversity of Trichoderma. Diversity, 2(4), 527–549. https://doi.org/10.3390/d2040527

Druzhinina, I. S., Komoń-Zelazowska, M., Atanasova, L., Seidl, V., & Kubicek, C. P. (2010). Evolution and Ecophysiology of the Industrial Producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a New Sympatric Agamospecies Related to It. PLoS ONE, 5(2), e9191. https://doi.org/10.1371/journal.pone.0009191

Druzhinina, I. S., Kubicek, C. P., Komon-Zelazowska, M., Belayneh Mulaw, T., & Bissett, J. (2010). The Trichoderma harzianum demon : complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages. BMC Evolutionary Biology, 10(1), 94. https://doi.org/10.1186/1471-2148-10-94

Druzhinina, I., & Kubicek, C. P. (2010). Large scale screening for new Hypocrea/Trichoderma isolates active in biological control of pests.

Gal-Hemed, I., Atanasova, L., Komon-Zelazowska, M., Druzhinina, I., Kubicek, C. P., Viterbo, A., & Yarden, O. (2010). Characterization of Trichoderma isolates of marine origin and assessment of their potential as biocontrol agents. In IOBC/WPRS Working Group (p. 76).

Tjandrawati Nugroho, T., Komon-Zelazowska, M., Atanasova, L., Kubicek, C. P., & Druzhinina, I. (2010). Strategy for the correct identification of Indonesian biocontrol fungi using molecular methods. The Gruber-Soedigo Lecture 2010, University of Groningen, Niederlande, EU.

Zhang, C.-L., Wang, G.-P., Mao, L.-J., Komon-Zelazowska, M., Yuan, Z.-L., Lin, F.-C., Druzhinina, I. S., & Kubicek, C. P. (2010). Muscodor fengyangensis sp.nov. from southeast China : morphology, physiology and production of volatile compounds. Fungal Biology, 114(10), 797–808. https://doi.org/10.1016/j.funbio.2010.07.006

Kemptner, J., Marchetti-Deschmann, M., Mach, R., Druzhinina, I. S., Kubicek, C. P., & Allmaier, G. (2009). Evaluation of matrix-assisted laser desorption/ionization (MALDI) preparation techniques for surface characterization of intact Fusarium spores by MALDI linear time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 23(6), 877–884. https://doi.org/10.1002/rcm.3949

Kopchinskiy, A., Fuchs, M., & Hofbauer, H. (Eds.). (2009). ICPS 09 - Book of Abstracts. Manz Crossmedia.

Kredics, L., Kocsubé, S., Nagy, L., Komon-Zelazowska, M., Manczinger, L., Sajben, E., Nagy, A., Vágvölgyi, C., Kubicek, C. P., Druzhinina, I., & Hatvani, L. (2009). Molecular identification of Trichoderma species associated with Pleurotus ostreatus and natural substrates of the oyster mushroom. FEMS Microbiology Letters, 300(1), 58–67. https://doi.org/10.1111/j.1574-6968.2009.01765.x

Kubicek, C. P., & Druzhinina, I. (2009). Biosprit aus Algen (Endbericht).

Kubicek, C. P., & Druzhinina, I. (2009). Large scale screening for new Hypocrea / Trichoderma isolates active in biological control of pests (1.Zwischenbericht).

Kubicek, C. P., Allmaier, G., Mach, R. L., & Druzhinina, I. (2009). Multidisziplinäre Detektion und Beurteilung einheimischer Fusarien (Endbericht).

Le Crom, S., Schackwitz, W., Pennacchio, L., Magnuson, J. K., Culley, D. E., Collett, J. R., Martin, J., Druzhinina, I. S., Mathis, H., Monot, F., Seiboth, B., Cherry, B., Rey, M., Berka, R., Kubicek, C. P., Baker, S. E., & Margeot, A. (2009). Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proceedings of the National Academy of Sciences, 106(38), 16151–16156. https://doi.org/10.1073/pnas.0905848106

Le Crom, S., Schackwitz, W., Pennacchio, L., Magnuson, J., Culley, D., Collett, J., Martin, J., Druzhinina, I., Mathis, H., Monot, F., Seiboth, B., Cherry, B., Rey, M., Berka, R. M., Kubicek, C. P., Baker, S. E., & Margeot, A. (2009). Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. In Eurofung Meeting (p. 24).

Marchetti-Deschmann, M., Winkler, W., Kemptner, J., Raptakis, E., Druzhinina, I., Mach, R. L., Kubicek, C. P., & Allmaier, G. (2009). Classification of mycotoxin-producing Fusarium species based on MALDI-TOF MS analyses of their intact spores. In Proceedings of the 57th ASMS conference on mass spectrometry and allied topics (p. 3).

Migheli, Q., Balmas, V., Komoñ-Zelazowska, M., Scherm, B., Fiori, S., Kopchinskiy, A. G., Kubicek, C. P., & Druzhinina, I. S. (2009). Soils of a Mediterranean hot spot of biodiversity and endemism (Sardinia, Tyrrhenian Islands) are inhabited by pan-European, invasive species of Hypocrea/Trichoderma. Environmental Microbiology, 11(1), 35–46. https://doi.org/10.1111/j.1462-2920.2008.01736.x

Mikus, M., Hatvani, L., Neuhof, T., Komoń-Zelazowska, M., Dieckmann, R., Schwecke, T., Druzhinina, I. S., von Döhren, H., & Kubicek, C. P. (2009). Differential Regulation and Posttranslational Processing of the Class II Hydrophobin Genes from the Biocontrol Fungus Hypocrea atroviridis. Applied and Environmental Microbiology, 75(10), 3222–3229. https://doi.org/10.1128/aem.01764-08

Seidl, V., Song, L., Lindquist, E., Gruber, S. G., Koptchinskiy, A., Zeilinger, S., Schmoll, M., Martínez, P., Sun, J., Grigoriev, I., Herrera-Estrella, A., Baker, S. E., & Kubicek, C. P. (2009). Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey. BMC Genomics, 10(567). https://doi.org/10.1186/1471-2164-10-567

Zachow, C., Berg, C., Müller, H., Meincke, R., Komon-Zelazowska, M., Druzhinina, I. S., Kubicek, C. P., & Berg, G. (2009). Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands) : relationship to vegetation zones and environmental factors. The ISME Journal: Multidisciplinary Journal of Microbial Ecology, 3(1), 79–92. https://doi.org/10.1038/ismej.2008.87

Brunner, K., Omann, M., Pucher, M. E., Delic, M., Lehner, S. M., Domnanich, P., Kratochwill, K., Druzhinina, I., Denk, D., & Zeilinger, S. (2008). Trichoderma G protein-coupled receptors : functional characterisation of a cAMP receptor-like protein from Trichoderma atroviride. Current Genetics, 54(6), 283–299. https://doi.org/10.1007/s00294-008-0217-7

Druzhinina, I., Komon-Zelazowska, M., Kredics, L., Hatvani, L., Antal, Z., Belayneh, T., & Kubicek, C. P. (2008). Alternative reproductive strategies of Hypocrea orientalis and genetically close but clonal Trichoderma longibrachiatum, both capable of causing mycoses of humans. Microbiology, 154, 3447–3459.

Friedl, M., Kubicek, C. P., & Druzhinina, I. (2008). Carbon Source Dependence and Photosimulation of Conidiation in Hypocrea atroviridis. Applied and Environmental Microbiology, 74, 245–250.

Friedl, M., Schmoll, M., Kubicek, C. P., & Druzhinina, I. (2008). Photosimulation of Hypocrea atroviridis growth occurs due to a cross-talk of carbon metabolism, blue light receptors and response to oxidative stress. Microbiology, 154, 1229–1241.

Jaklitsch, W. M., Kubicek, C. P., & Druzhinina, I. (2008). Three European species of Hypocrea with reddish brown stromata and green ascospores. Mycologia, 100, 796–815.

Kubicek, C. P., Baker, S. E., Gamauf, C., Kenerley, C., & Druzhinina, I. (2008). Purifying selection and birth-and-death evolution in the class II hydrophobin gene families of the ascomycete Trichoderma/Hypocrea. BMC Evolutionary Biology, 8, 1–16.

Kubicek, C. P., Komon-Zelazowska, M., & Druzhinina, I. (2008). Fungal genus Hypocrea/Trichoderma : from barcodes to biodiversity. Journal of Zheijang University SCIENCE B - Biomedicine & Biotechnology, 9, 753–763.

Seidl, V., Gamauf, C., Druzhinina, I., Seiboth, B., Hartl, L., & Kubicek, C. P. (2008). The Hypocrea jecorina (Trichoderma reesei) hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding) region of the wild-type genome. BMC Genomics, 9, 1–15.

Vàczy, K. Z., Sandor, E., Karaffa, L., Fekete, E., Fekete, E., Arnyasi, M., Czegledi, L., Kövics, G. J., Druzhinina, I., & Kubicek, C. P. (2008). Sexual Recombination in the Botrytis cinerea Populations in Hungarian Vineyards. Phytopathology, 98, 1312–1319.

Belayneh, T., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2007). Ethiopia as a hot spot for diversity of indigenous Hypocrea/Trichoderma species: screening for efficient agents to control coffee wilt disease. Biological Control Symposium, Graz, Austria.

Druzhinina, I. (2007). Idendification of fout Trichoderma strains for industrial use GEPROMA 3, Final Projekt Report.

Hatvani, L., Antal, Z., Manczinger, L., Druzhinina, I., Kubicek, C. P., Szekeres, A., Vágvölgyi, C., & Kredics, L. (2007). Worldwide Green Mold Disease of the Oyster Mushroom (Pleurotus ostreatus) is caused by Two New Species of Trichoderma, T.fulvidum and T. pleurotophilum. International Journal of Medicinal Mushrooms, 9(3 & amp;4), 241–242.

Hatvani, L., Antal, Z., Manczinger, L., Szekeres, A., Druzhinina, I., Kubicek, C. P., Nagy, A., Nagy, E., Vágvölgyi, C., & Kredics, L. (2007). Green Mold Diseases of Agaricus and Pleurotus are Caused by Related but Phylogenetically Different Trichoderma Species. Journal of Phytopathology, 97, 532–537.

Hatvani, L., Kocsubè, L., Antal, Z., Szekeres, A., Druzhinina, I., Kubicek, C. P., Vágvölgyi, C., & Kredics, L. (2007). Pleurotus green mould disease: A PCR -based test for the rapid detection of the causative agents, Trichoderma pleurotophilum and Trichoderma fulvidum. In Acta Microbiologica et Immunologica Hungarica (pp. 45–46).

Hatvani, L., Kocsubè, L., Manczinger, L., Druzhinina, I., Kubicek, C. P., Vágvölgyi, C., & Kredics, L. (2007). A PCR-Based Test for the Rapid Detection of Trichoderma pleurotophilum and T. fulvidum, the Causative Agents of the Newly Emerged Worldwide Green Mold Disease of Pleurotus ostreatus. International Journal of Medicinal Mushrooms, 9(3 & amp; 4), 309–310.

Komon-Zelazowska, M., & Kubicek, C. P. (2007). Further molecular analysis of a potential industrial strain of Trichoderma (GEPROMA 3), Final Project Report.

Komon-Zelazowska, M., Bisset, J., Zafari, D., Hatvani, L., Manczinger, L., Woo, S. L., Lorito, M., Kredics, L., Kubicek, C. P., & Druzhinina, I. (2007). Genetically closely related but phenotypically divergent Trichoderma species cause world-wide green mould disease in oyster mushroom farms. Applied and Environmental Microbiology, 73, 7415–7426.

Komon-Zelazowska, M., Mpika, J., Kubicek, C. P., & Druzhinina, I. (2007). Icommensurably low diversity of Hypocrea/Trichoderma in the rhizosphere of Theobroma cacao L. infected by black pod in Ivory Coast cacao plantation s. Biological Control Symposium, Graz, Austria.

Kredics, L., Hatvani, L., Kocsubè, L., Komon-Zelazowska, M., Manczinger, L., Szekeres, A., Vágvölgyi, C., Kubicek, C. P., & Druzhinina, I. (2007). Cells as Producers of Food and Drinks Green Mold diseases of cultivated Mushrooms: Global Developments and the Situation in Hungary. In Power of microbes in industry and environment (p. 40).

Kubicek, C. P., & Druzhinina, I. (2007). Population genetics and phylogeny of Trichoderma.

Kubicek, C. P., & Druzhinina, I. (Eds.). (2007). The Mycota Vol.4 : Environmental and Microbial Relationships. Springer-Verlag.

Kubicek, C. P., Komon-Zelazowska, M., Sandor, E., & Druzhinina, I. (2007). Facts and challenges in the understanding of the biosynthesis of peptaibols by Trichoderma. Chemistry and Biodiversity, 4, 1068–1082.

Nagy, V., Seidl, V., Szakacs, G., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2007). Application of DNA BarCodes for screening of industrially important fungi: the haplotype of Trichoderma harzianum sensu stricto indicates superior chitinase formation. Applied and Environmental Microbiology, 73, 7048–7058.

Neuhof, T., Dieckmann, R., Druzhinina, I., Kubicek, C. P., & von Döhren, H. (2007). Intact-Cell MALDI-TOF mass spectrometry analysis of peptaibol formation by the genus Trichoderma: can molecular phylogenic knowledge predict peptaibol structures ? Microbiology, 153, 3417–3437.

Neuhof, T., Dieckmann, R., Druzhinina, I., Kubicek, C. P., Nakari - Seleta, T., Penttilä, M. E., & von Döhren, H. (2007). Direct identification of hydrophobins and their processing in Trichoderma using Intact-Cell MALDI-TOF mass spectrometry. The FEBS Journal, 274, 841–852.

Schuster, A., Kubicek, C. P., Friedl, M. A., Druzhinina, I. S., & Schmoll, M. (2007). Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process. BMC Genomics, 8(449). https://doi.org/10.1186/1471-2164-8-449

Schuster, A., Kubicek, C. P., Friedl, M., Druzhinina, I., & Schmoll, M. (2007). Novel functions of the light response regulatory protein Envoy in Hypocrea jecorina. In Molecular Biology of Fungi (p. 128).

Zhang, C.-L., Liu, S.-P., Lin, F.-C., Kubicek, C. P., & Druzhinina, I. (2007). Trichoderma taxi sp. nov., an endophytic fungus from Chinese yew Taxus mairei, emphasizes the difficulties to phylogenetically align new species within Trichoderma/Hypocrea. FEMS Microbiology Letters, 270, 90–96.

Balmas, V., Scherm, B., Caria, R., Komon-Zelazowska, M., Druzhinina, I., Kubicek, C. P., & Migheli, Q. (2006). Species Pattern, Genetic Diversity and Biocontrol Potential of Trichoderma in Sardinia. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria.

Belayneh, T., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). Indigenous Hypocrea/Trichoderma species as efficient agents for control of coffee wilt disease in Ethiopia. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria.

Dela Cruz, T. E., Druzhinina, I., Kubicek, C. P., & Schulz, B. (2006). Metabolic profiles support species concept of two marine Dendryphiella species D. arenaria and D. salina. In Proc. of 8#^{th} International Mycological Congress (p. 343).

Dela Cruz, T. E., Schulz, B., Komon-Zelazowska, M., & Druzhinina, I. (2006). Conidial morphology: homology or homoplasy? The analysis of molecular data shows that marine Dendryphiella species do not belong to the genus Scolecobasidium. In Proc. of 8#^{th} International Mycological Congress (p. 17).

Dela Cruz, T. E., Schulz, B., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). DNA sequence analysis and metabolic profiles demonstrate existence of two marine Dendryphiella species that do not belong to the genus Scolecobasidium. In Book of Abstracts (p. 418).

Dela Cruz, T. E., Schulz, B., Kubicek, C. P., & Druzhinina, I. (2006). Carbon Source Utilization by the Marine Dendryphiella species D.arenaria D.salina. FEMS Microbiology Ecology, 59, 343–353.

Druzhinina, I. (2006). An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. In Proc. of COST 853 (p. 10).

Druzhinina, I., & Kopchinski, A. (2006). TrichOKEY v.2 - a DNA oligonucliotide BarCode program for the identification of multiple seqences of Hypocrea and Trichoderma. In IMC8 2006 Cairns (pp. 53–59). Medimond - Monduzzi Editore International.

Druzhinina, I., Kopchinski, A., & Kubicek, C. P. (2006). The first 100 Trichoderma species is characterized by molecular data. Mycoscience, 47, 55–64.

Druzhinina, I., Kopchinski, A., Komon-Zelazowska, M., & Kubicek, C. P. (2006). An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. In Proceedings of the 8#^{th} International Mycological Congress (p. 150).

Druzhinina, I., Kopchinskiy, A., & Kubicek, C. P. (Eds.). (2006). 8th European Conference on Fungal Genetics - Book of Abstracts. Manz Crossmedia.

Druzhinina, I., La Fe, K., Komon-Zelazowska, M., Ammirati, J., Kubicek, C. P., & Rogers, J. D. (2006). An unknown species from Hypocreaceae isolated from human lungs. In Proc. of 106#^{th} General Meeting of American Society for Microbiology. 106#^{th} General Meeting of American Society for Microbiology, Orlando, Florida, USA, Non-EU.

Druzhinina, I., La Fe, K., Komon-Zelazowska, M., Rogers, J. D., & Kubicek, C. P. (2006). An unkwown species of Hyporeaceae isolated from lung tissue of a patient with pulmonary fibrosis. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria.

Druzhinina, I., Schmoll, M., Seiboth, B., & Kubicek, C. P. (2006). Global Carbon Utilization Profiles of Wild Type, Mutant and Transformant Strains of Hypocrea jecorina. Applied and Environmental Microbiology, 72(3), 2126–2132.

Friedl, M., Schmoll, M., Kubicek, C. P., & Druzhinina, I. (2006). Carbon source depending interaction of cAMP signalling pathway and light in Hypocrea atroviridis. In 8th International Mycological Congress: Congress Handbook & Abstracts (p. 124). IMC8 Organising Committee.

Friedl, M., Schmoll, M., Kubicek, C. P., & Druzhinina, I. (2006). Light stimulation of growth and conidiation in Hypocrea atroviridis is carbon source dependent. In I. Druzhinina, A. Kopchinskiy, & P. C. Kubicek (Eds.), 8th European Conference on Fungal Genetics - Book of Abstracts (p. 167). Manz Crossmedia.

Jaklitsch, W. M., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). Hypocrea crystalligena sp. nov. and H. voglmayrii sp. nov. from Europe represent two new clades in Hypocrea/Trichoderma phylogeny. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria.

Jaklitsch, W. M., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). Hypocrea crystalligena sp.nov., a common European species with a white-spored Trichoderma anamorph. Mycologia, 98(3), 499–513.

Jaklitsch, W. M., Samuels, G. J., Dodd, S. L., Lu, B., & Druzhinina, I. (2006). Hypocrea rufa/ Trichoderma viride: a reassessment, and description of five closley related species with and without warted conidia. Studies in Mycology, 56, 135–177.

Komon-Zelazowska, M., Bisset, J., Zafari, D., Hatvani, L., Woo, S. L., Manczinger, L., Lorito, M., Kredics, L., Kubicek, C. P., & Druzhinina, I. (2006). A recently emerging green mold disease in Eurasian oyster mushroom farms is caused by new species of Trichoderma. In Proc.8#^{th} International Mycological Congress (p. 37).

Kopchinski, A., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). TrichoMASTER: integrated multiloci database for Hypocrea/Trichoderma species identification powered by sequence diagnosis, oligonucleotide barcode and similarity search tools. In Proc.8#^{th} International Mycological Congress (p. 38).

Kredics, L., Antal, Z., Szekeres, A., Hatvani, L., Komon-Zelazowska, M., Manczinger, L., Vágvölgyi, C., Nagy, E., Kubicek, C. P., & Druzhinina, I. (2006). Taxonomical aspects of Trichoderma as an opportunistic human patogen. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria.

Samuels, G. J., Dodd, S. L., Lu, B., Petrini, O., Schroers, H., & Druzhinina, I. (2006). The Trichoderma koningii agregate species. Studies in Mycology, 56, 67–133.

Seidl, V., & Druzhinina, I. (2006). A screening system for carbon sources enhancing β-N-acetylglucosaminidase formation in Hypocrea atroviridis (Trichoderma atroviride). In Book of Abstracts (p. 202).

Vàczy, K. Z., Druzhinina, I., Kubicek, C. P., Karaffa, L., Gàl, L., Kövics, G. J., & Sandor, E. (2006). Analysis of Botrytis cinera populations in the Eger and Tokaj wine regions - a multiloci approach. In Book of Abstracts (p. 413).

Dela Cruz, T. E., Schulz, B., Kubicek, C. P., & Druzhinina, I. (2005). Metabolic and genetic diversity of marine Dendryphiella species from different geographical locations. In Exploitation of Fungi (p. 50).

Druzhinina, I., & Kubicek, C. P. (2005). Species concepts and biodiversity in Trichoderma and Hypocrea: from aggregate species clusters? Journal of Zhejiang University, 6B(2), 100–112.

Druzhinina, I., & Szakacs, G. (2005). Increased Extracellular Chitinase Production in Solid Substrate Fermentation by Trichoderma Harzianum Haplotype AA. In Acta Microbiologica et Immunologica (p. 107).

Druzhinina, I., Kopchinski, A., Komon-Zelazowska, M., & Kubicek, C. P. (2005). An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. MBE 05, Auckland, New Zealand, Non-EU.

Druzhinina, I., Kopchinski, A., Komon-Zelazowska, M., Bisset, J., Szakacs, G., & Kubicek, C. P. (2005). An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genetics and Biology, 42, 813–828.

Kopchinski, A., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2005). TrichoBLAST: a multiloci database of phylogenetic markers for Trichoderma and Hypocrea powerd by sequence diagnosis and similarity search tool. MBE 05, Auckland, New Zealand, Non-EU.

Kopchinski, A., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2005). Trichoblast: A Multilocus Database for Trichoderma and Hypocrea Identifications. Mycological Research, 109(6), 658–660.

Sandor, E., Vàczy, K. Z., Druzhinina, I., Kubicek, C. P., & Karaffa, L. (2005). Genetic Characterization of Grape-Infecting, Botrytis Cinerea Populations from the Eger Wine Region, Hungary. In Acta Microbiologica et Immunologica (p. 135).

Seidl, V., Huemer, B., Seiboth, B., Druzhinina, I., & Kubicek, C. P. (2005). Characterization of the chitinolytic system ot Trichoderma: development of a novel screening method to monitor gene expression on multiple carbon sources. In Fungal Genetics Asilomar 2005 (p. 106).

Zhang, C., Druzhinina, I., Kubicek, C. P., & Xu, T. (2005). Trichoderma biodiversity in China: Evidence for a North to South distribution of species in East Asia. FEMS Microbiology Letters, 251, 251–257.

Komon-Zelazowska, M., Poputnikova, T., Terekhova, V., Kubicek, C. P., & Druzhinina, I. (2004). Trichoderma biodiversity in virgin spruce south taiga ecosystems. Int. Symposium from Ecosystem Functioning to Biotechnology Application, Vienna , Austria, Austria.

Mach, R. L., Reischer, G., Kubicek, C. P., & Druzhinina, I. (2004). Eine kritische Beurteilung der biologischen Aktivität heimischer Fusarium spp. auf natürlichen Substraten.

Schmoll, M., Seiboth, B., Druzhinina, I., Pail, M., Seidl, V., Hartl, L., Gamauf, C., Komon-Zelazowska, M., Dorrer, M., Huemer, B., & Kubicek, C. P. (2004). Microbial enzymes for industrial application of renewable raw materials: molecular basis for strain improvement in Trichoderma . 1.Minisysmposium für Nachwachsende Rohstoffe und Erneuerbare Energien, Wien, Austria.

Druzhinina, I., & Palma-Oliveira, J. M. (2002). Contaminated mushrooms: objective hazards versus the lay risk perception. Society of Risk Analysis - Europe, 12th Annual Meeting, Berlin, Germany, Austria.

Druzhinina, I., & Palma-Oliveira, J. M. (2002). Radioactive contamination of wild mushrooms: a cross-cultural risk perception study. International Conference on Radioactivity in the Environment, Monaco, Austria.

Palma-Oliveira, J. M., Druzhinina, I., & Antunes, D. (2002). Local "heaven in a “hell” of a word: ecological risk perception in its context. Society of Risk Analysis Annual Meeting, New Orleans, USA, Austria.